View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1684_low_9 (Length: 287)
Name: NF1684_low_9
Description: NF1684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1684_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 23 - 270
Target Start/End: Original strand, 44259179 - 44259426
Alignment:
| Q |
23 |
aaacgacaaaaatggaacaattagtcacaaaagagatnnnnnnntgaagatggccaaaggtggtcttagatcactcataatagctgtttcatttcctcta |
122 |
Q |
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|||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44259179 |
aaacgacagaaatggtacaattagtcacaaaagagataaaaaaatgaagatggccaaaggtggtcttagatcactcataatagctgtttcatttcctcta |
44259278 |
T |
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| Q |
123 |
tcaataacccttttatccatttacatgtcctcttctttcaccttctcaaaccacaacaaagaagtaataaccggttctaaaaagcctttttggtttccac |
222 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44259279 |
tcaataacccttttatccatttacatatcctcttctttcaccttctcaaaccacaacaaagaagtaataaccggttctaaaaagcctttttggtttccac |
44259378 |
T |
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| Q |
223 |
catcatgggccttacaccttcttttacctgcttcaagcttcttgatgg |
270 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
44259379 |
catcatgggccttacaccttcttttaccttcttcaagcttcttgatgg |
44259426 |
T |
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