View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1685-Insertion-2 (Length: 128)
Name: NF1685-Insertion-2
Description: NF1685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1685-Insertion-2 |
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| [»] chr7 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 121; Significance: 2e-62; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 2e-62
Query Start/End: Original strand, 8 - 128
Target Start/End: Original strand, 2855883 - 2856003
Alignment:
| Q |
8 |
aatgagccaagtttggaggaagtgaagatggcttttgatgtttttgatgagaacaaagatggttttattgatgcaatggagttgaaaagagttatgtgta |
107 |
Q |
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| T |
2855883 |
aatgagccaagtttggaggaagtgaagatggcttttgatgtttttgatgagaacaaagatggttttattgatgcaatggagttgaaaagagttatgtgta |
2855982 |
T |
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| Q |
108 |
ttttgggatttaaggaaggtt |
128 |
Q |
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| T |
2855983 |
ttttgggatttaaggaaggtt |
2856003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 8e-28
Query Start/End: Original strand, 8 - 128
Target Start/End: Original strand, 2851786 - 2851911
Alignment:
| Q |
8 |
aatgagccaagtttggaggaagtgaagatggcttttga-------tgtttttgatgagaacaaagatggttttattgatgcaatggagttgaaaagagtt |
100 |
Q |
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| T |
2851786 |
aatgaaccatgtttagaggaagtgaagatgacttttgaatttttatggttttaatgagaacaaagatggtt--attgatgcaatggagttgcaaagagtt |
2851883 |
T |
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| Q |
101 |
atgtgtattttgggatttaaggaaggtt |
128 |
Q |
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| T |
2851884 |
atgtgtattttgggatttaaggaaggtt |
2851911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 101; Significance: 2e-50; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 2e-50
Query Start/End: Original strand, 8 - 128
Target Start/End: Original strand, 8216172 - 8216292
Alignment:
| Q |
8 |
aatgagccaagtttggaggaagtgaagatggcttttgatgtttttgatgagaacaaagatggttttattgatgcaatggagttgaaaagagttatgtgta |
107 |
Q |
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| T |
8216172 |
aatgagccaagtttggaggaagtttagatggcttttgatgtttttgatgagaacaaagatggttttattgattcaatggagttgaaaaatgttatgtgta |
8216271 |
T |
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| Q |
108 |
ttttgggatttaaggaaggtt |
128 |
Q |
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| T |
8216272 |
ttttgggatttaaggaaggtt |
8216292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 1e-45; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 1e-45
Query Start/End: Original strand, 8 - 128
Target Start/End: Original strand, 10477802 - 10477922
Alignment:
| Q |
8 |
aatgagccaagtttggaggaagtgaagatggcttttgatgtttttgatgagaacaaagatggttttattgatgcaatggagttgaaaagagttatgtgta |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||| ||| ||||||||||||||| |
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| T |
10477802 |
aatgagccaagtttggaggaagtgaagatggcttttgacgtttttgatgagaacaaagatggatttattgatgcaaaggaattgcaaagagttatgtgta |
10477901 |
T |
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| Q |
108 |
ttttgggatttaaggaaggtt |
128 |
Q |
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| T |
10477902 |
ttttgggattgaatgaaggtt |
10477922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 3e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 3e-27
Query Start/End: Original strand, 8 - 117
Target Start/End: Complemental strand, 52971298 - 52971189
Alignment:
| Q |
8 |
aatgagccaagtttggaggaagtgaagatggcttttgatgtttttgatgagaacaaagatggttttattgatgcaatggagttgaaaagagttatgtgta |
107 |
Q |
| |
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|||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| | || |
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| T |
52971298 |
aatgagcctagtttggaggagttgaagcaagcttttgatgtttttgatgagaacaaagatggttttattgatgcaaaggagttgcaaagagttcttgtta |
52971199 |
T |
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| Q |
108 |
ttttgggatt |
117 |
Q |
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|||||||||| |
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| T |
52971198 |
ttttgggatt |
52971189 |
T |
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