View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1685-Insertion-5 (Length: 566)

Name: NF1685-Insertion-5
Description: NF1685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1685-Insertion-5
NF1685-Insertion-5
[»] chr8 (6 HSPs)
chr8 (7-566)||(32703514-32704077)
chr8 (81-176)||(32709621-32709716)
chr8 (9-172)||(32627687-32627851)
chr8 (64-169)||(7297849-7297954)
chr8 (500-562)||(32627368-32627430)
chr8 (63-99)||(7293445-7293481)
[»] chr3 (2 HSPs)
chr3 (66-176)||(27736647-27736757)
chr3 (346-562)||(27736266-27736482)
[»] chr4 (2 HSPs)
chr4 (44-176)||(5811328-5811460)
chr4 (345-562)||(5810993-5811210)
[»] chr6 (4 HSPs)
chr6 (63-176)||(20116015-20116128)
chr6 (340-473)||(21943190-21943323)
chr6 (63-173)||(21943546-21943656)
chr6 (347-559)||(20116569-20116781)
[»] chr5 (1 HSPs)
chr5 (72-154)||(8029200-8029282)


Alignment Details
Target: chr8 (Bit Score: 472; Significance: 0; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 7 - 566
Target Start/End: Complemental strand, 32704077 - 32703514
Alignment:
Q  7 aggtccctcgacatgttcaaagaaaatctacaggctgaa-tggaaaccgaaatggcaccttgctacttctttggggttcctggttccttctatggcagga 105  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  32704077 aggtccctcgacacgttcaaagaaaatctacaggctgaaatggaaaccgaaatggtaccttgctacttctttggggttcccggttccttctatggcagga 32703978  T
Q  106 tttttcctaataaaagtttgcattttgttcattcctcttatagccttcagtttctatctaaggtttgtttacatgaactctcttttcttattcttttgtt 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  32703977 tttttcctaataaaagtttgcattttgttcattcctcttatagccttaagtttctatctaaggtttgtttacatgaactctcttttcttaatcttttgtt 32703878  T
Q  206 tgttacaattcttttttgtattctatgtatctttaactagcttttcacctaaataccaaattttatttttatttaatctacttgtgtagattggtgaaat 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  32703877 tgttacaattcttttttgtattctatgtatctttaactagcttttcacctaaataccaaattttatttttatttaacctacttgtatagattggtgaaat 32703778  T
Q  306 tattttattgaaatatgatcaattaggtt-cggacggtgtagacaacaacaaaggcaatatttactt-ggccagcacaagcccctcaagtgtcattaagg 403  Q
    ||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  32703777 tattttattgacatgtgatcaattaggttccggacggtgtagacaacaacaaaggcaatatttacttgggccagcacaagcccctcaagtgtcattaagg 32703678  T
Q  404 cttactatgaaaaatttagaaaagatttctcattttttctaaaatgtcgtgccctagagttagttgaaggtgggatcctgattcttactattatttg-aa 502  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||| | ||    
T  32703677 cttactatgaacaatatagaaaagatttctcattttttctaaaatgtcgtgccctagagttagttgaaggtgggagcctggttcttacttttattggaaa 32703578  T
Q  503 gaaaaagcgaagatccatcaagcaaagagtgttgttacgtttgggaagttatggctatgggtct 566  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32703577 gaaaaagcgaagatccatcaagcaaagagtgttgttacgtttgggaagttatggctatgggtct 32703514  T

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Target: chr8; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 81 - 176
Target Start/End: Complemental strand, 32709716 - 32709621
Alignment:
Q  81 gttcctggttccttctatggcaggatttttcctaataaaagtttgcattttgttcattcctcttatagccttcagtttctatctaaggtttgttta 176  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||  ||  ||||||||||||||||||    
T  32709716 gttcctggttctttctatggcaggatttttcctaatcaaagtttgcattttgtccattcctcttacagccttatgtggctatctaaggtttgttta 32709621  T

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Target: chr8; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 9 - 172
Target Start/End: Complemental strand, 32627851 - 32627687
Alignment:
Q  9 gtccctcgacatgttcaaagaaaatctacaggctgaa-tggaaaccgaaatggcaccttgctacttctttggggttcctggttccttctatggcaggatt 107  Q
    |||||| ||||| ||||||||||| ||||  | |||| |||  || |||||||  || |||| |||||  || ||||||||||||||  |||| || |||    
T  32627851 gtcccttgacattttcaaagaaaaactacttgatgaaatggggactgaaatgggtccatgcttcttctcaggagttcctggttcctttcatggtagaatt 32627752  T
Q  108 tttcctaataaaagtttgcattttgttcattcctcttatagccttcagtttctatctaaggtttg 172  Q
    ||||||  | ||||||||||||||||||||||||||||||||||||| |   |||||||||||||    
T  32627751 tttcctcttcaaagtttgcattttgttcattcctcttatagccttcattggttatctaaggtttg 32627687  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 64 - 169
Target Start/End: Complemental strand, 7297954 - 7297849
Alignment:
Q  64 cttgctacttctttggggttcctggttccttctatggcaggatttttcctaataaaagtttgcattttgttcattcctcttatagccttcagtttctatc 163  Q
    |||||||||| ||||||||||||||||| |||||| | ||  |||||||||||  |||||| |||||  ||||||||||| | ||||||||||  |||||    
T  7297954 cttgctacttttttggggttcctggttctttctatagtagagtttttcctaatcgaagtttacatttcattcattcctctcacagccttcagtggctatc 7297855  T
Q  164 taaggt 169  Q
     |||||    
T  7297854 aaaggt 7297849  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 500 - 562
Target Start/End: Complemental strand, 32627430 - 32627368
Alignment:
Q  500 gaagaaaaagcgaagatccatcaagcaaagagtgttgttacgtttgggaagttatggctatgg 562  Q
    |||||||||||||  ||||| ||||||| |||||||||||| |||||||| || |||||||||    
T  32627430 gaagaaaaagcgacaatccaacaagcaaggagtgttgttacatttgggaacttttggctatgg 32627368  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 63 - 99
Target Start/End: Complemental strand, 7293481 - 7293445
Alignment:
Q  63 ccttgctacttctttggggttcctggttccttctatg 99  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  7293481 ccttgctacttctttggtgttcctggttctttctatg 7293445  T

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Target: chr3 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 66 - 176
Target Start/End: Complemental strand, 27736757 - 27736647
Alignment:
Q  66 tgctacttctttggggttcctggttccttctatggcaggatttttcctaataaaagtttgcattttgttcattcctcttatagccttcagtttctatcta 165  Q
    |||||||||| ||| ||||||||||| || |||||||| ||||||||  |||| ||||||||||||||||||||||| ||||| ||||| |  |||||||    
T  27736757 tgctacttctatggagttcctggttcattttatggcagaatttttccagataatagtttgcattttgttcattcctcgtatagtcttcaatggctatcta 27736658  T
Q  166 aggtttgttta 176  Q
    |||||||||||    
T  27736657 aggtttgttta 27736647  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 346 - 562
Target Start/End: Complemental strand, 27736482 - 27736266
Alignment:
Q  346 gacaacaacaaaggcaatatttacttggccagcacaagcccctcaagtgtcattaaggcttactatgaaaaatttagaaaagatttctcattttttctaa 445  Q
    ||||||||||| || || |||||| || | ||||||||||||||||  ||||| |||||||||||  |  ||||| ||| ||||||||| ||||||||      
T  27736482 gacaacaacaagggaaacatttacctgacgagcacaagcccctcaaacgtcatcaaggcttactacaagcaatttcgaacagatttctctttttttcttc 27736383  T
Q  446 aatgtcgtgccctagagttagttgaaggtgggatcctgattcttactattatttgaagaaaaagcgaagatccatcaagcaaagagtgttgttacgtttg 545  Q
     ||||||||||  ||| ||||||||||| |      ||||||| ||  || |  |||| ||| ||||  ||||||||||||| |||||||||||| ||||    
T  27736382 gatgtcgtgccaaagaattagttgaaggagctcaaatgattctaacacttttaggaaggaaatgcgacaatccatcaagcaaggagtgttgttacatttg 27736283  T
Q  546 ggaagttatggctatgg 562  Q
    |||| | ||||||||||    
T  27736282 ggaactcatggctatgg 27736266  T

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Target: chr4 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 44 - 176
Target Start/End: Complemental strand, 5811460 - 5811328
Alignment:
Q  44 aatggaaaccgaaatggcaccttgctacttctttggggttcctggttccttctatggcaggatttttcctaataaaagtttgcattttgttcattcctct 143  Q
    ||||||||| |||||||  ||||||||||||| ||| |||||||| ||||| ||| | ||||| |||||  ||||||||||||||||||| ||||| |||    
T  5811460 aatggaaactgaaatgggtccttgctacttctctggtgttcctggatccttttatagtaggatctttccagataaaagtttgcattttgtgcattcttct 5811361  T
Q  144 tatagccttcagtttctatctaaggtttgttta 176  Q
    || || ||||| |   |||||||||||||||||    
T  5811360 tacagtcttcaatggttatctaaggtttgttta 5811328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 345 - 562
Target Start/End: Complemental strand, 5811210 - 5810993
Alignment:
Q  345 agacaacaacaaaggcaatatttacttggccagcacaagcccctcaagtgtcattaaggcttactatgaaaaatttagaaaagatttctcattttttcta 444  Q
    |||||||||||| ||||| |||||| || | |||||||||||||||| ||||   |||||||||||  |  |||||  || ||||||||| ||||||||     
T  5811210 agacaacaacaagggcaacatttacctgacgagcacaagcccctcaaatgtccacaaggcttactacaagcaatttcaaacagatttctctttttttctc 5811111  T
Q  445 aaatgtcgtgccctagagttagttgaaggtgggatcctgattcttactattatttgaagaaaaagcgaagatccatcaagcaaagagtgttgttacgttt 544  Q
    || |||||||||  |||  |||||||||||||   | ||||||| ||  || |  || |||||| |   |||||||||||||| |||| | ||||| |||    
T  5811110 aagtgtcgtgccgaagaactagttgaaggtggtcacatgattctaacatttttaggacgaaaaaacagtgatccatcaagcaaggagtctggttacattt 5811011  T
Q  545 gggaagttatggctatgg 562  Q
    ||||| | ||||||||||    
T  5811010 gggaactcatggctatgg 5810993  T

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Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 63 - 176
Target Start/End: Original strand, 20116015 - 20116128
Alignment:
Q  63 ccttgctacttctttggggttcctggttccttctatggcaggatttttcctaataaaagtttgcattttgttcattcctcttatagccttcagtttctat 162  Q
    ||||||||||||| ||| ||||| |||||||| |||||||| ||||| |||||| | ||||| ||||| ||||||||||| |||||| |||| |   |||    
T  20116015 ccttgctacttctctggtgttcccggttccttttatggcagaattttccctaatgagagtttacatttagttcattcctcatatagcattcattggttat 20116114  T
Q  163 ctaaggtttgttta 176  Q
    ||||||||||||||    
T  20116115 ctaaggtttgttta 20116128  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 340 - 473
Target Start/End: Complemental strand, 21943323 - 21943190
Alignment:
Q  340 ggtgtagacaacaacaaaggcaatatttacttggccagcacaagcccctcaagtgtcattaaggcttactatgaaaaatttagaaaagatttctcatttt 439  Q
    |||||||||||||| || ||||| ||||||||||| | |||||||||||||| |||| | ||||||||||||||  |||||   | |||||| ||  |||    
T  21943323 ggtgtagacaacaataagggcaacatttacttggcgaccacaagcccctcaaatgtcttcaaggcttactatgagcaatttcatagagatttatctcttt 21943224  T
Q  440 ttctaaaatgtcgtgccctagagttagttgaagg 473  Q
    ||||||| |||||||||| |||  ||||||||||    
T  21943223 ttctaaagtgtcgtgcccaagaactagttgaagg 21943190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 63 - 173
Target Start/End: Complemental strand, 21943656 - 21943546
Alignment:
Q  63 ccttgctacttctttggggttcctggttccttctatggcaggatttttcctaataaaagtttgcattttgttcattcctcttatagccttcagtttctat 162  Q
    ||||||||||||||||| ||||| |||||||| |||||||| ||||||||| |  |||||||||||||| ||||| ||||||  || ||||| |  || |    
T  21943656 ccttgctacttctttggtgttcccggttccttttatggcagaatttttccttaccaaagtttgcattttattcatgcctcttgcagtcttcattggctct 21943557  T
Q  163 ctaaggtttgt 173  Q
    |||||||||||    
T  21943556 ctaaggtttgt 21943546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 559
Target Start/End: Original strand, 20116569 - 20116781
Alignment:
Q  347 acaacaacaaaggcaatatttacttggccagcacaagcccctcaagtgtcattaaggcttactatgaaaaatttagaaaagatttctcattttttctaaa 446  Q
    |||||||||| |||||||||||| | || | ||||||||| |||| |||| | ||||| || |||||| ||||| | |  ||||||||  ||||||| ||    
T  20116569 acaacaacaagggcaatatttacatagcgaacacaagcccatcaaatgtcttcaaggcatattatgaacaatttcgtattgatttctctctttttctcaa 20116668  T
Q  447 atgtcgtgccctagagttagttgaaggtgggatcctgattcttactattatttgaagaaaaagcgaagatccatcaagcaaagagtgttgttacgtttgg 546  Q
     |||||||||  ||| || |||||||| ||   | ||||||| ||  ||||  ||||| |||| || ||||||| |||||| | |  ||||||| |||||    
T  20116669 gtgtcgtgccaaagaattggttgaaggaggttgcatgattctgacatttataggaagagaaagtgatgatccattaagcaatggggtttgttacctttgg 20116768  T
Q  547 gaagttatggcta 559  Q
    ||| || ||||||    
T  20116769 gaacttttggcta 20116781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 72 - 154
Target Start/End: Original strand, 8029200 - 8029282
Alignment:
Q  72 ttctttggggttcctggttccttctatggcaggatttttcctaataaaagtttgcattttgttcattcctcttatagccttca 154  Q
    |||| ||||| ||||||||| || ||||||||||||||||| |  ||||   |||||||  ||||||||||||| ||||||||    
T  8029200 ttctatggggctcctggttctttttatggcaggatttttccaacaaaaacaatgcatttcattcattcctcttacagccttca 8029282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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