View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1685-Insertion-6 (Length: 262)

Name: NF1685-Insertion-6
Description: NF1685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1685-Insertion-6
NF1685-Insertion-6
[»] chr4 (8 HSPs)
chr4 (1-259)||(18497453-18497710)
chr4 (222-254)||(34370989-34371021)
chr4 (219-262)||(49039439-49039482)
chr4 (218-260)||(40051294-40051336)
chr4 (218-262)||(21023345-21023389)
chr4 (230-262)||(29785208-29785240)
chr4 (230-262)||(49319451-49319483)
chr4 (222-262)||(53494218-53494258)
[»] chr6 (4 HSPs)
chr6 (219-262)||(30833075-30833118)
chr6 (219-262)||(19680242-19680285)
chr6 (218-262)||(10455800-10455845)
chr6 (219-259)||(6455514-6455554)
[»] chr5 (3 HSPs)
chr5 (218-260)||(13862184-13862226)
chr5 (222-258)||(7064768-7064803)
chr5 (218-262)||(22687874-22687918)
[»] chr3 (4 HSPs)
chr3 (215-260)||(17262279-17262324)
chr3 (210-259)||(42665910-42665959)
chr3 (219-262)||(42935478-42935521)
chr3 (229-262)||(24130617-24130650)
[»] chr1 (11 HSPs)
chr1 (218-262)||(9769573-9769617)
chr1 (218-258)||(40679847-40679887)
chr1 (219-262)||(2903021-2903064)
chr1 (219-262)||(3341730-3341773)
chr1 (219-262)||(9768803-9768846)
chr1 (209-259)||(42908832-42908882)
chr1 (229-262)||(50199480-50199513)
chr1 (218-262)||(195102-195146)
chr1 (218-262)||(16182867-16182911)
chr1 (219-259)||(41677121-41677161)
chr1 (230-262)||(48260194-48260226)
[»] chr7 (1 HSPs)
chr7 (219-262)||(41853519-41853562)
[»] chr2 (4 HSPs)
chr2 (219-262)||(1244627-1244670)
chr2 (218-257)||(29896154-29896193)
chr2 (219-260)||(39118453-39118494)
chr2 (219-255)||(5029094-5029130)
[»] chr8 (5 HSPs)
chr8 (218-260)||(220355-220397)
chr8 (218-260)||(689510-689552)
chr8 (218-260)||(733978-734020)
chr8 (218-260)||(857874-857916)
chr8 (219-259)||(22837545-22837585)


Alignment Details
Target: chr4 (Bit Score: 151; Significance: 6e-80; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 18497710 - 18497453
Alignment:
Q  1 agctaataatttatagaaggaatcaaatttgttaaataagtgatgttcatttcatnnnnnnngaagaagagatgtttaggttttgttactagtctatttt 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||    
T  18497710 agctaataatttatagaaggaatcaaatttgtcaaataagtgatgttcatttcataaaaaaagaagaagagatgtttaggttttgttactagtctatttt 18497611  T
Q  101 attgttttttagaggaactatcaaaataagaaatatcattttcctcatggtagttaaagacggatttgatgttctagcgaccccgactctannnnnnnnn 200  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||             
T  18497610 attgttttttaaaggaactatcaaaataagaaatatcattttcctcagggtagttaaagacggatttgatgttcta-cgaccccgactcta-tttttttt 18497513  T
Q  201 ggtggggta-tctattgattagaattcttctttttcaaggagaataagtggggtgtccgg 259  Q
    |||| |||| |||||||| ||||||| |  ||||| |||||||||||||||| |||||||    
T  18497512 ggtgaggtagtctattgactagaattttctttttttaaggagaataagtgggatgtccgg 18497453  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 222 - 254
Target Start/End: Complemental strand, 34371021 - 34370989
Alignment:
Q  222 aattcttctttttcaaggagaataagtggggtg 254  Q
    |||||||||||||||||||||||||||||||||    
T  34371021 aattcttctttttcaaggagaataagtggggtg 34370989  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 262
Target Start/End: Original strand, 49039439 - 49039482
Alignment:
Q  219 tagaattcttctttttcaaggagaataagtggggtgtccggggt 262  Q
    ||||||||  ||||||||||| ||||||||||||||||||||||    
T  49039439 tagaattcacctttttcaaggtgaataagtggggtgtccggggt 49039482  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 260
Target Start/End: Original strand, 40051294 - 40051336
Alignment:
Q  218 ttagaattcttctttttcaaggagaataagtggggtgtccggg 260  Q
    ||||||||||||||||| |||| ||||||||||||||| ||||    
T  40051294 ttagaattcttcttttttaaggtgaataagtggggtgttcggg 40051336  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 262
Target Start/End: Original strand, 21023345 - 21023389
Alignment:
Q  218 ttagaattcttctttttcaaggagaataagtggggtgtccggggt 262  Q
    |||||||||  ||||||||||| |||||||||||||||| |||||    
T  21023345 ttagaattcacctttttcaaggtgaataagtggggtgtcgggggt 21023389  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 262
Target Start/End: Complemental strand, 29785240 - 29785208
Alignment:
Q  230 tttttcaaggagaataagtggggtgtccggggt 262  Q
    |||||||||| ||||||||||||||||||||||    
T  29785240 tttttcaaggtgaataagtggggtgtccggggt 29785208  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 262
Target Start/End: Complemental strand, 49319483 - 49319451
Alignment:
Q  230 tttttcaaggagaataagtggggtgtccggggt 262  Q
    |||||||||| ||||||||||||||||||||||    
T  49319483 tttttcaaggtgaataagtggggtgtccggggt 49319451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 262
Target Start/End: Complemental strand, 53494258 - 53494218
Alignment:
Q  222 aattcttctttttcaaggagaataagtggggtgtccggggt 262  Q
    ||||| ||||||||||| |||||||||| ||||||||||||    
T  53494258 aattcctctttttcaagtagaataagtgaggtgtccggggt 53494218  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 219 - 262
Target Start/End: Complemental strand, 30833118 - 30833075
Alignment:
Q  219 tagaattcttctttttcaaggagaataagtggggtgtccggggt 262  Q
    ||||||||| ||||||||||||||||||||||||||||||||||    
T  30833118 tagaattctcctttttcaaggagaataagtggggtgtccggggt 30833075  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 219 - 262
Target Start/End: Original strand, 19680242 - 19680285
Alignment:
Q  219 tagaattcttctttttcaaggagaataagtggggtgtccggggt 262  Q
    ||||||||  ||||||||||||||||||||||||||||||||||    
T  19680242 tagaattcacctttttcaaggagaataagtggggtgtccggggt 19680285  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 218 - 262
Target Start/End: Complemental strand, 10455845 - 10455800
Alignment:
Q  218 ttagaattcttctttttcaaggagaataagt-ggggtgtccggggt 262  Q
    ||||||||||  ||||||||||||||||||| ||||||||||||||    
T  10455845 ttagaattctcttttttcaaggagaataagtgggggtgtccggggt 10455800  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 259
Target Start/End: Complemental strand, 6455554 - 6455514
Alignment:
Q  219 tagaattcttctttttcaaggagaataagtggggtgtccgg 259  Q
    |||||||| |||||||||||| |||||||| ||||||||||    
T  6455554 tagaattcatctttttcaaggtgaataagtagggtgtccgg 6455514  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 218 - 260
Target Start/End: Complemental strand, 13862226 - 13862184
Alignment:
Q  218 ttagaattcttctttttcaaggagaataagtggggtgtccggg 260  Q
    |||||||||| |||||||||| |||||||||||||||||||||    
T  13862226 ttagaattctcctttttcaagaagaataagtggggtgtccggg 13862184  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 258
Target Start/End: Original strand, 7064768 - 7064803
Alignment:
Q  222 aattcttctttttcaaggagaataagtggggtgtccg 258  Q
    ||||||||||||| |||||||||||||||||||||||    
T  7064768 aattcttcttttt-aaggagaataagtggggtgtccg 7064803  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 262
Target Start/End: Original strand, 22687874 - 22687918
Alignment:
Q  218 ttagaattcttctttttcaaggagaataagtggggtgtccggggt 262  Q
    |||||||||  ||||||||||| ||||||||||||||| ||||||    
T  22687874 ttagaattcacctttttcaaggtgaataagtggggtgttcggggt 22687918  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 215 - 260
Target Start/End: Complemental strand, 17262324 - 17262279
Alignment:
Q  215 tgattagaattcttctttttcaaggagaataagtggggtgtccggg 260  Q
    ||||||||||||  ||||||||||| ||||||||||||||||||||    
T  17262324 tgattagaattcacctttttcaaggtgaataagtggggtgtccggg 17262279  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 210 - 259
Target Start/End: Original strand, 42665910 - 42665959
Alignment:
Q  210 tctattgattagaattcttctttttcaaggagaataagtggggtgtccgg 259  Q
    |||| |||||||||||| | |||||||||| |||||||||||||||||||    
T  42665910 tctagtgattagaattcatttttttcaaggtgaataagtggggtgtccgg 42665959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 262
Target Start/End: Complemental strand, 42935521 - 42935478
Alignment:
Q  219 tagaattcttctttttcaaggagaataagtggggtgtccggggt 262  Q
    |||||||||  ||||||||||||||||||||||||||| |||||    
T  42935521 tagaattctcatttttcaaggagaataagtggggtgtctggggt 42935478  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 229 - 262
Target Start/End: Complemental strand, 24130650 - 24130617
Alignment:
Q  229 ctttttcaaggagaataagtggggtgtccggggt 262  Q
    ||||||||||| ||||||||||||||||||||||    
T  24130650 ctttttcaaggtgaataagtggggtgtccggggt 24130617  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 218 - 262
Target Start/End: Original strand, 9769573 - 9769617
Alignment:
Q  218 ttagaattcttctttttcaaggagaataagtggggtgtccggggt 262  Q
    |||||||||  ||||||||||| ||||||||||||||||||||||    
T  9769573 ttagaattcacctttttcaaggtgaataagtggggtgtccggggt 9769617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 218 - 258
Target Start/End: Complemental strand, 40679887 - 40679847
Alignment:
Q  218 ttagaattcttctttttcaaggagaataagtggggtgtccg 258  Q
    |||||||||| |||||| |||||||||||||||||||||||    
T  40679887 ttagaattctccttttttaaggagaataagtggggtgtccg 40679847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 262
Target Start/End: Original strand, 2903021 - 2903064
Alignment:
Q  219 tagaattcttctttttcaaggagaataagtggggtgtccggggt 262  Q
    ||||||||| ||||||||||| ||||||||||||||| ||||||    
T  2903021 tagaattctcctttttcaaggtgaataagtggggtgttcggggt 2903064  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 262
Target Start/End: Original strand, 3341730 - 3341773
Alignment:
Q  219 tagaattcttctttttcaaggagaataagtggggtgtccggggt 262  Q
    ||||||||  ||||||||||| ||||||||||||||||||||||    
T  3341730 tagaattcacctttttcaaggtgaataagtggggtgtccggggt 3341773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 262
Target Start/End: Original strand, 9768803 - 9768846
Alignment:
Q  219 tagaattcttctttttcaaggagaataagtggggtgtccggggt 262  Q
    ||||||||  ||||||||||| ||||||||||||||||||||||    
T  9768803 tagaattcacctttttcaaggtgaataagtggggtgtccggggt 9768846  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 259
Target Start/End: Complemental strand, 42908882 - 42908832
Alignment:
Q  209 atctattgattagaattcttctttttcaaggagaataagtggggtgtccgg 259  Q
    ||||| || |||||||||| |||||||||| |||||||||||||| |||||    
T  42908882 atctagtggttagaattctcctttttcaagaagaataagtggggtatccgg 42908832  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 229 - 262
Target Start/End: Original strand, 50199480 - 50199513
Alignment:
Q  229 ctttttcaaggagaataagtggggtgtccggggt 262  Q
    ||||||||||| ||||||||||||||||||||||    
T  50199480 ctttttcaaggtgaataagtggggtgtccggggt 50199513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 262
Target Start/End: Complemental strand, 195146 - 195102
Alignment:
Q  218 ttagaattcttctttttcaaggagaataagtggggtgtccggggt 262  Q
    |||||||||  ||||||||||| |||||||||||||||| |||||    
T  195146 ttagaattcacctttttcaaggtgaataagtggggtgtctggggt 195102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 262
Target Start/End: Complemental strand, 16182911 - 16182867
Alignment:
Q  218 ttagaattcttctttttcaaggagaataagtggggtgtccggggt 262  Q
    ||||||||| | |||||||||  ||||||||||||||||||||||    
T  16182911 ttagaattcatatttttcaagatgaataagtggggtgtccggggt 16182867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 259
Target Start/End: Complemental strand, 41677161 - 41677121
Alignment:
Q  219 tagaattcttctttttcaaggagaataagtggggtgtccgg 259  Q
    ||||||||  ||||||||||| |||||||||||||||||||    
T  41677161 tagaattcacctttttcaaggtgaataagtggggtgtccgg 41677121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 262
Target Start/End: Original strand, 48260194 - 48260226
Alignment:
Q  230 tttttcaaggagaataagtggggtgtccggggt 262  Q
    |||||||||| ||||||||||||||||||||||    
T  48260194 tttttcaaggtgaataagtggggtgtccggggt 48260226  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 262
Target Start/End: Original strand, 41853519 - 41853562
Alignment:
Q  219 tagaattcttctttttcaaggagaataagtggggtgtccggggt 262  Q
    ||||||||| ||||||||||||||||||||||||| | ||||||    
T  41853519 tagaattctcctttttcaaggagaataagtggggtattcggggt 41853562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 262
Target Start/End: Complemental strand, 1244670 - 1244627
Alignment:
Q  219 tagaattcttctttttcaaggagaataagtggggtgtccggggt 262  Q
    ||||||||  ||||||||||| ||||||||||||||||||||||    
T  1244670 tagaattcacctttttcaaggtgaataagtggggtgtccggggt 1244627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 218 - 257
Target Start/End: Original strand, 29896154 - 29896193
Alignment:
Q  218 ttagaattcttctttttcaaggagaataagtggggtgtcc 257  Q
    ||||||||| |||||||||||| |||||||||||||||||    
T  29896154 ttagaattcatctttttcaaggtgaataagtggggtgtcc 29896193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 260
Target Start/End: Complemental strand, 39118494 - 39118453
Alignment:
Q  219 tagaattcttctttttcaaggagaataagtggggtgtccggg 260  Q
    ||||||||| |||||| |||||||||||||||||||| ||||    
T  39118494 tagaattctccttttttaaggagaataagtggggtgttcggg 39118453  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 255
Target Start/End: Original strand, 5029094 - 5029130
Alignment:
Q  219 tagaattcttctttttcaaggagaataagtggggtgt 255  Q
    |||||||| |||||||||||| |||||||||||||||    
T  5029094 tagaattcatctttttcaaggtgaataagtggggtgt 5029130  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 260
Target Start/End: Original strand, 220355 - 220397
Alignment:
Q  218 ttagaattcttctttttcaaggagaataagtggggtgtccggg 260  Q
    |||||||||  ||||||||||| ||||||||||||||||||||    
T  220355 ttagaattcacctttttcaaggtgaataagtggggtgtccggg 220397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 260
Target Start/End: Original strand, 689510 - 689552
Alignment:
Q  218 ttagaattcttctttttcaaggagaataagtggggtgtccggg 260  Q
    |||||||||  ||||||||||| ||||||||||||||||||||    
T  689510 ttagaattcacctttttcaaggtgaataagtggggtgtccggg 689552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 260
Target Start/End: Original strand, 733978 - 734020
Alignment:
Q  218 ttagaattcttctttttcaaggagaataagtggggtgtccggg 260  Q
    |||||||||  ||||||||||| ||||||||||||||||||||    
T  733978 ttagaattcacctttttcaaggtgaataagtggggtgtccggg 734020  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 260
Target Start/End: Original strand, 857874 - 857916
Alignment:
Q  218 ttagaattcttctttttcaaggagaataagtggggtgtccggg 260  Q
    |||||||||  ||||||||||| ||||||||||||||||||||    
T  857874 ttagaattcacctttttcaaggtgaataagtggggtgtccggg 857916  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 259
Target Start/End: Original strand, 22837545 - 22837585
Alignment:
Q  219 tagaattcttctttttcaaggagaataagtggggtgtccgg 259  Q
    |||||||||  ||||||||||||||||||||||| ||||||    
T  22837545 tagaattctcttttttcaaggagaataagtggggcgtccgg 22837585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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