View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16850_high_2 (Length: 340)
Name: NF16850_high_2
Description: NF16850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16850_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 11 - 324
Target Start/End: Original strand, 40076013 - 40076325
Alignment:
| Q |
11 |
cagagatgtaagagcaggtggggatgacagataaggagtgagaggtggcatgattaaaggcagcgagagtgaggtgagaagccaaacccaaacctctctt |
110 |
Q |
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| T |
40076013 |
cagagatgtaagagcaggtggggatgacagataaggagtgagaggtggcatgattaaaggcagcgagagtgaggtgagaagccaaacccaaacctctctt |
40076112 |
T |
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| Q |
111 |
ggaaggaggaacaaaagtatgtaccaaatccaacacttttccgttgtctctaaggacatactccaagtacgctttcttgtcttctgtctcaaacctcttt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40076113 |
ggaaggaggaacaaaagtatgtaccaaatccaacacttttccgttgtctctaaggacatactccaagtacgctttcttgtcttctgtctcaaacctcttt |
40076212 |
T |
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| Q |
211 |
gtcccttcgttccacacgatcattggacttccacttccaacaatattcgccattttcctcaactcaccgaaaaaccaaagacaatagtatgaatattttg |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
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| T |
40076213 |
gtcccttcgttccacacgatcattggacttccacttccaacaatattcgccattttcctcaactcaccgaaaaaccgaagacaatagtatg-atattttg |
40076311 |
T |
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| Q |
311 |
acaagggagagatt |
324 |
Q |
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|||||||||||||| |
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| T |
40076312 |
acaagggagagatt |
40076325 |
T |
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