View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16850_high_3 (Length: 325)
Name: NF16850_high_3
Description: NF16850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16850_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 19 - 318
Target Start/End: Original strand, 15284431 - 15284730
Alignment:
| Q |
19 |
gagaccagatggtcatgcaggtgcttatatgaatccttttccatttgtaaatggagttccaaaatatgtacaaaatgattgtgttcattggtgcttacca |
118 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
15284431 |
gagaccagatggtcatgctggtgcttatatgaatccttttccatttgcaaatggagttccaaaatatgtacaaaatgattgtgttcattggtgcttgcca |
15284530 |
T |
|
| Q |
119 |
ggacctatagatacttggaatgagattattttggagatgatgaagaagaaaattggatcctcgaggagatgatccggatacgtaaagaatggggaaaacg |
218 |
Q |
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||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||| |
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| T |
15284531 |
ggacctatagatacttggaatgagattttgttggagatgatgaagaagaaatctggatcatcgaggagatgatccggatacgtaaagaagggggaaaacg |
15284630 |
T |
|
| Q |
219 |
attagaatatcttatgagttaatgtgtatacttgtgaatgattagccgatgattgtatacgagacaagtacattattggttgtgtctttcattcatttca |
318 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||| |||||||||||||||||||| |
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| T |
15284631 |
attagaatatcttatgtgttaatgtgtatacttgtgaatgattagtcgatgattgtatacgataaaagtacattattgactgtgtctttcattcatttca |
15284730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 19 - 164
Target Start/End: Complemental strand, 15287484 - 15287339
Alignment:
| Q |
19 |
gagaccagatggtcatgcaggtgcttatatgaatccttttccatttgtaaatggagttccaaaatatgtacaaaatgattgtgttcattggtgcttacca |
118 |
Q |
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|||||||||||||||| ||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
15287484 |
gagaccagatggtcatccaggtccttacatgaatccttttccatttgcaaatggagttccaaaatatgtacaaaatgattgtgttcattggtgcttgcca |
15287385 |
T |
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| Q |
119 |
ggacctatagatacttggaatgagattattttggagatgatgaaga |
164 |
Q |
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||||||||||||||||||||||||||| || | ||||||||||||| |
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| T |
15287384 |
ggacctatagatacttggaatgagatttttgtagagatgatgaaga |
15287339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 19 - 166
Target Start/End: Original strand, 15262942 - 15263089
Alignment:
| Q |
19 |
gagaccagatggtcatgcaggtgcttatatgaatccttttccatttgtaaatggagttccaaaatatgtacaaaatgattgtgttcattggtgcttacca |
118 |
Q |
| |
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|||||||||||||||| |||||||||| |||||||||||||| || | || || |||||||| ||||| ||||||||||||||||||||||| || || |
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| T |
15262942 |
gagaccagatggtcatccaggtgcttacatgaatccttttccgttcgcgaacggtgttccaaagtatgtgcaaaatgattgtgttcattggtgtttgcct |
15263041 |
T |
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| Q |
119 |
ggacctatagatacttggaatgagattattttggagatgatgaagaag |
166 |
Q |
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||||||||||||||||||||||||||| || | ||||||||||||||| |
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| T |
15263042 |
ggacctatagatacttggaatgagatttttctagagatgatgaagaag |
15263089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 19 - 165
Target Start/End: Complemental strand, 15256813 - 15256667
Alignment:
| Q |
19 |
gagaccagatggtcatgcaggtgcttatatgaatccttttccatttgtaaatggagttccaaaatatgtacaaaatgattgtgttcattggtgcttacca |
118 |
Q |
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|||||||||||||||| ||||| |||||||| | ||||||||||||| ||||| |||||| || ||| || |||||||||||||||||||| || || |
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| T |
15256813 |
gagaccagatggtcatccaggtccttatatgtacccttttccatttgccaatggtgttccagaacgtgtgcagaatgattgtgttcattggtgtttgcct |
15256714 |
T |
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| Q |
119 |
ggacctatagatacttggaatgagattattttggagatgatgaagaa |
165 |
Q |
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||||||||||| || |||||||||||| || ||||||| |||||||| |
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| T |
15256713 |
ggacctatagacacatggaatgagatttttctggagattatgaagaa |
15256667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 15265337 - 15265213
Alignment:
| Q |
20 |
agaccagatggtcatgcaggtgcttatatgaatccttttccatttgtaaatggagttccaaaatatgtacaaaatgattgtgttcattggtgcttaccag |
119 |
Q |
| |
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||||||||||||||| ||||| |||||||||||||||||||||| | ||||| |||| | || |||| ||||||||||||||||||||||| || || | |
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| T |
15265337 |
agaccagatggtcatccaggtccttatatgaatccttttccattctttaatggggttcaagaacatgtgcaaaatgattgtgttcattggtgtttgcctg |
15265238 |
T |
|
| Q |
120 |
gacctatagatacttggaatgagat |
144 |
Q |
| |
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|||| || ||||| ||||||||||| |
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| T |
15265237 |
gaccaattgatacatggaatgagat |
15265213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 19 - 165
Target Start/End: Complemental strand, 44248129 - 44247983
Alignment:
| Q |
19 |
gagaccagatggtcatgcaggtgcttatatgaatccttttccatttg-taaatggagttccaaaatatgtacaaaatgattgtgttcattggtgcttacc |
117 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||| |||| || |||||||| ||||||||||||||||||||||||||||||| || |
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| T |
44248129 |
gagaccagatggtcatgcaggagcttatatgaatccttttccatttgctaaaagg-gttccaaagaatgtacaaaatgattgtgttcattggtgcttgcc |
44248031 |
T |
|
| Q |
118 |
aggacctatagatacttggaatgagattattttggagatgatgaagaa |
165 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||| ||||||||||||| |
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| T |
44248030 |
aggacctatagatatttggaatgagatttttttgcagatgatgaagaa |
44247983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 19 - 166
Target Start/End: Original strand, 51383616 - 51383763
Alignment:
| Q |
19 |
gagaccagatggtcatgcaggtgcttatatgaatccttttccatttgtaaatggagttccaaaatatgtacaaaatgattgtgttcattggtgcttacca |
118 |
Q |
| |
|
||||||||||||||||||||| || || ||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||| || ||| |
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| T |
51383616 |
gagaccagatggtcatgcaggagcctacatgaatccttttccatttgctaatggaattccaaagtatgtacaaaatgattgtgttcattggtgtttgcca |
51383715 |
T |
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| Q |
119 |
ggacctatagatacttggaatgagattattttggagatgatgaagaag |
166 |
Q |
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||||||||||| ||||||||||||||| |||||||||| ||||||||| |
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| T |
51383716 |
ggacctatagacacttggaatgagatttttttggagatcatgaagaag |
51383763 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 19 - 166
Target Start/End: Complemental strand, 11807047 - 11806900
Alignment:
| Q |
19 |
gagaccagatggtcatgcaggtgcttatatgaatccttttccatttgtaaatggagttccaaaatatgtacaaaatgattgtgttcattggtgcttacca |
118 |
Q |
| |
|
||||||||||||||||||||| ||||||| | ||||||||||||||| || | ||||||| |||||||||| |||||| |||||||||||| ||| |
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| T |
11807047 |
gagaccagatggtcatgcaggagcttataggtatccttttccatttgctaaaacaattccaaagaatgtacaaaacgattgtactcattggtgcttgcca |
11806948 |
T |
|
| Q |
119 |
ggacctatagatacttggaatgagattattttggagatgatgaagaag |
166 |
Q |
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|||||||| |||||||||||||||||| |||||||||||||||||||| |
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| T |
11806947 |
ggacctattgatacttggaatgagatttttttggagatgatgaagaag |
11806900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 142
Target Start/End: Complemental strand, 6543709 - 6543659
Alignment:
| Q |
92 |
aatgattgtgttcattggtgcttaccaggacctatagatacttggaatgag |
142 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||| | ||||| ||||||||| |
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|
| T |
6543709 |
aatgattgtgttcattggtgtttacctggacctgttgatacatggaatgag |
6543659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 6554224 - 6554179
Alignment:
| Q |
92 |
aatgattgtgttcattggtgcttaccaggacctatagatacttgga |
137 |
Q |
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| T |
6554224 |
aatgattgtgttcattggtgtttgccagggcctatagatacatgga |
6554179 |
T |
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