View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16850_low_1 (Length: 457)
Name: NF16850_low_1
Description: NF16850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16850_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 136 - 443
Target Start/End: Original strand, 37196620 - 37196927
Alignment:
| Q |
136 |
tatctatcaaatttgttgggtccaaaaatacacatttcctcactcaaatggcctctgtacgtttgtttttgttagctattttgatcattgtctcactttc |
235 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
37196620 |
tatctatcaaatttgttgggtccaaaaatacacatttcctcactcaaatggcctctgtccgtttgtttttgttagctattttgatcattgtgtcactttc |
37196719 |
T |
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| Q |
236 |
cagcattgacaatgtccaaggtggtgggactagaaaacttttgacacaaacatttcctgatttgggcaaaattccagggctagagtttcctcctttccca |
335 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37196720 |
cagcattgacaatgtccaaggtggtgggactagaaaacttttgacacaaacatttcctgatttgggcaaaattccagggctagagtttcctcctttccca |
37196819 |
T |
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| Q |
336 |
ccagtgactgaatggccagagtacaggttgcctccacccattttcaatattcctgacttcttctctccaccatatgccaccacaactgctactaccaaac |
435 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37196820 |
ccagtgactgaatggccagagtacaggttgcctccacccattttcaatattcctgacttcttctctccaccatatgccaccacaactgctactaccaaac |
37196919 |
T |
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| Q |
436 |
catgatga |
443 |
Q |
| |
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|||||||| |
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| T |
37196920 |
catgatga |
37196927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 37196474 - 37196598
Alignment:
| Q |
20 |
tcaaatatttctctttgaattaactcatgtacgaatatggtttaagttgtactataaaaacacaagaaccaactcttatgttgtcacttgtcttcactct |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37196474 |
tcaaatatttctctttgaattaactcatgtacgaatatggtttaagttgtactataaaaacacaagaaccaactcttatgttgtcacttgtcttcactct |
37196573 |
T |
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| Q |
120 |
tctcccttactgcaattatctatca |
144 |
Q |
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||||||||||| ||||||||||||| |
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| T |
37196574 |
tctcccttactacaattatctatca |
37196598 |
T |
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