View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16851_high_1 (Length: 493)
Name: NF16851_high_1
Description: NF16851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16851_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 12 - 477
Target Start/End: Original strand, 52765291 - 52765756
Alignment:
| Q |
12 |
atgaaggttacgtagcacatgcaatgcgccagtaattacaaatgtagggaaattttcggtagagtttctgattcttccatatgcactaaaacaagcaatc |
111 |
Q |
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| T |
52765291 |
atgaaggttacgtagcacatgcaatgcgccagtaattacaaatgtagggaaattttcggtagagtttctgattcttccatatgcactaaaacaagcaatc |
52765390 |
T |
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| Q |
112 |
tatgaattgtgtatcattagccctattgtatgctatgtaccttaacctatatcattgggggcagtacatacttatagaaacattatacatcacatatatt |
211 |
Q |
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| T |
52765391 |
tatgaattgtgtatcattagccctattgtatgctatgtaccttaacctatatcattgggggcagtacatacttatagaaacattatacatcacatatatt |
52765490 |
T |
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| Q |
212 |
tacgcacatacttttagaagcatttaacattatgaaccaaagaaaatcacttttccaactcatgggtgtctaattccagtggctaattttattggttttt |
311 |
Q |
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| T |
52765491 |
tacgcacatacttttagaagcatttaacattatgaaccaaagaaaatcacttttccaactcatgggtgtct-tttccagtggctaattttattggttttt |
52765589 |
T |
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| Q |
312 |
cagagaagtagttggtgtaaatgctagttgcaattctccatttatgcgcatatgcagaagatatgttgatgaaaagagaaggaaaaaggtatagaaagtg |
411 |
Q |
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| T |
52765590 |
cagagaagtagttggtgtaaatgctagttgcaattctccatttatgcgcatatgcagaagatatattgatgaaaagagaaggaaaaaggtattgaaagtg |
52765689 |
T |
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| Q |
412 |
aggtgatcagccataactatccagtggttttttacgttga-ttagagactgaacttaactgctgaat |
477 |
Q |
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| T |
52765690 |
aggtgatcagccataactatccagtggttttttactttgatttagagactgaacttaactgttgaat |
52765756 |
T |
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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 297 - 361
Target Start/End: Original strand, 7416654 - 7416718
Alignment:
| Q |
297 |
attttattggtttttcagagaagtagttggtgtaaatgctagttgcaattctccatttatgcgca |
361 |
Q |
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||||||||| || |||||||||||||||||||||||||||| || ||||| |||||||| |||| |
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| T |
7416654 |
attttattgtttgttcagagaagtagttggtgtaaatgctacttctaattcaccatttatacgca |
7416718 |
T |
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