View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16851_high_2 (Length: 482)
Name: NF16851_high_2
Description: NF16851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16851_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 9 - 353
Target Start/End: Original strand, 46894154 - 46894498
Alignment:
| Q |
9 |
agcagagatcgcaaggcatgattggtgaatgttctttttccaaaatcaagctactacatgtactattcccagctttgcatccatcaatgtcacagagcaa |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46894154 |
agcagagatcgcaaggcatgattggtgaatgttctttttccaaaatcaagctactacatgtactattcccagctttgcatccatcaatgtcacagagcaa |
46894253 |
T |
|
| Q |
109 |
atcggattctgcctcttcttctaactcaaactgtctgagaaggctatcatcgcctagaggattcgtattgcctctaggattcatgttgcctacaatccag |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46894254 |
atcggattctgcctcttcttctaactcaaactgtctgagaaggctatcatcgcctagaggattcgtattgcctctaggattcatgttgcctacaatccag |
46894353 |
T |
|
| Q |
209 |
aacaagcttattttttatatggcactataataatctaaagaaacataataaactcaacgaatttataaggatcatattgnnnnnnngtttgactattgtt |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
46894354 |
aacaagcttattttttatatggcactataataatctaaagaaacataataaactcaacgaatttataaggatcatattgtttttttgtttgactattgtt |
46894453 |
T |
|
| Q |
309 |
cttaccaaatcactttttgaaacatttcaataaacaaaatatttt |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
46894454 |
cttaccaaatcactttttgaaacatttcaataaacataatatttt |
46894498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 351 - 459
Target Start/End: Original strand, 46894561 - 46894669
Alignment:
| Q |
351 |
tttcatttttcagaatcaaattaacacatcaagaaaaacaaataacaactcttgtagcaccaacacttctcaacttgtctgatgtctggcacatgtcaat |
450 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46894561 |
tttcatttttcagaatcaaattaacagatcaagaaaaacaaataacaacttttgtagcaccaacacttctcaacttgtctgatgtctggcacatgtcaat |
46894660 |
T |
|
| Q |
451 |
gtccgacac |
459 |
Q |
| |
|
|| |||||| |
|
|
| T |
46894661 |
gtacgacac |
46894669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University