View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16851_high_6 (Length: 253)
Name: NF16851_high_6
Description: NF16851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16851_high_6 |
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| [»] scaffold0075 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 14935785 - 14935547
Alignment:
| Q |
1 |
ccgacttaacaagtttccctagcatagagatggtaggattctcaaggttctgaaaatcatataccataact--ataacagaaaggaaatattggtattag |
98 |
Q |
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| T |
14935785 |
ccgacttaacaagtttccctagcatagagatggtaggattctcaaggttctgaaaatcatataccataactctataacagaaaggaaatattggtattag |
14935686 |
T |
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| Q |
99 |
ctcatatctacaaacttttgacaaaatgagttaaattattctcacgataaaaagtggaaatgaatggatgagatataaccaagttgaatattgaaattta |
198 |
Q |
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| T |
14935685 |
ctcatatctacaaacttttgacaaaatgagttaaattattctcacgataaaaagtggaaatgaatggatgagatataaccaagttgaatattgaaattta |
14935586 |
T |
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| Q |
199 |
tgttctatttatattacaattacttttctatttaatttc |
237 |
Q |
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| T |
14935585 |
tgttctatttatattacaattacttttctatttaatttc |
14935547 |
T |
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Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 98
Target Start/End: Original strand, 21992395 - 21992490
Alignment:
| Q |
5 |
cttaacaagtttccctagcatagagatggtaggattctcaaggttctgaaaatcatataccata--actataacagaaaggaaatattggtattag |
98 |
Q |
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| T |
21992395 |
cttaacaagtgtccctagcaaagagagggtaggattctcaaggttctgaaaatcatatagcataacactgtaacagaagataaatattggtattag |
21992490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 99
Target Start/End: Original strand, 21952105 - 21952182
Alignment:
| Q |
22 |
gcatagagatggtaggattctcaaggttctgaaaatcatataccataactataacagaaaggaaatattggtattagc |
99 |
Q |
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| T |
21952105 |
gcatagagattgtagggttctccaaattttaaaaatcatataccagaactctagcagaaggaaaatattggtattagc |
21952182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 99
Target Start/End: Original strand, 21954460 - 21954521
Alignment:
| Q |
38 |
attctcaaggttctgaaaatcatataccataactataacagaaaggaaatattggtattagc |
99 |
Q |
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|||||| || || |||||||||||||||| |||| || ||||| | |||||||||||||||| |
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| T |
21954460 |
attctccagattttgaaaatcatataccagaactctagcagaaggaaaatattggtattagc |
21954521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0075 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0075
Description:
Target: scaffold0075; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 6 - 99
Target Start/End: Complemental strand, 14164 - 14071
Alignment:
| Q |
6 |
ttaacaagtttccctagcatagagatggtaggattctcaaggttctgaaaatcatataccataactataacagaaaggaaatattggtattagc |
99 |
Q |
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||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||| | ||||| |||||||| | ||||||| ||||||| |
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| T |
14164 |
ttaacaagtttccctagcatagaaatggtaggattctcgaggttttgaaaatcatatgcggtaactctaacagaaggaaaatatttatattagc |
14071 |
T |
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