View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16851_low_10 (Length: 205)
Name: NF16851_low_10
Description: NF16851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16851_low_10 |
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| [»] scaffold0537 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 62; Significance: 5e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 119 - 196
Target Start/End: Original strand, 5885747 - 5885824
Alignment:
| Q |
119 |
gtagtgtgtgggggatttattgttgttcgtattttgcagctgtgtttttgctactggatttgctgttgctgatgatgt |
196 |
Q |
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| T |
5885747 |
gtagtgtttgggggatttattgttgttcgtattttgcagctatgttgttgctactggatttgttgttgctgatgatgt |
5885824 |
T |
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Target: chr1 (Bit Score: 62; Significance: 5e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 119 - 196
Target Start/End: Complemental strand, 51510942 - 51510865
Alignment:
| Q |
119 |
gtagtgtgtgggggatttattgttgttcgtattttgcagctgtgtttttgctactggatttgctgttgctgatgatgt |
196 |
Q |
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| T |
51510942 |
gtagtgtttgggggatttattgttgttcgtattttgcagctgtgttgttgctactgaatatgctgttgctgatgatgt |
51510865 |
T |
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Target: chr5 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 119 - 196
Target Start/End: Complemental strand, 27708202 - 27708125
Alignment:
| Q |
119 |
gtagtgtgtgggggatttattgttgttcgtattttgcagctgtgtttttgctactggatttgctgttgctgatgatgt |
196 |
Q |
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||||||| |||| |||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||| |
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| T |
27708202 |
gtagtgtttgggtgatttattgttgtttgtattttgcagttgtgttgttgctactggatttgctgttgctgatgatgt |
27708125 |
T |
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Target: chr4 (Bit Score: 55; Significance: 8e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 119 - 189
Target Start/End: Complemental strand, 17384532 - 17384462
Alignment:
| Q |
119 |
gtagtgtgtgggggatttattgttgttcgtattttgcagctgtgtttttgctactggatttgctgttgctg |
189 |
Q |
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| T |
17384532 |
gtagtgtttgggggatttattgttgtttgtattttgcagttgtgttgttgctactggatttgctgttgctg |
17384462 |
T |
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Target: scaffold0537 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0537
Description:
Target: scaffold0537; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 119 - 196
Target Start/End: Original strand, 10611 - 10693
Alignment:
| Q |
119 |
gtagtgtgtgggggatttattgttgttcgtattttgcagc-----tgtgtttttgctactggatttgctgttgctgatgatgt |
196 |
Q |
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||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||| |
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| T |
10611 |
gtagtgtttgggggatttattgttgttcgtattttgcagctatgatgtgttgttgctactggatttgttgttgctgatgatgt |
10693 |
T |
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