View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16851_low_5 (Length: 323)
Name: NF16851_low_5
Description: NF16851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16851_low_5 |
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| [»] scaffold0293 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 16 - 311
Target Start/End: Original strand, 37596727 - 37597024
Alignment:
| Q |
16 |
tcatcccccatgttaattcaagtaaatgaaccattagaccggtttgaaactatttaacatatattccataattatttggcaccctcaacaacaa--caac |
113 |
Q |
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| T |
37596727 |
tcatcccccatgttaattcaagcaaatgaaccactagatcggtttgaaactatttaacatatattccataattatttggcaccttcaacaacaaaacaaa |
37596826 |
T |
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| Q |
114 |
nnnnnnnttcaagatcccctactgctcacatataatttgatgggcacgtgagatgataattggctgcattggtgtgaatggtgtgcatgtaaggtcacaa |
213 |
Q |
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| T |
37596827 |
aaaaaaactcaagatccgctactgctcatttataattttatggccacgtgagatgataattggctgcattggtgtgaatggtgtgcatgtaaggtcacaa |
37596926 |
T |
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| Q |
214 |
gatggctatggcatttcccaaaccgaatactatgaatgaaggaaagtatccacttgaaattcctactttccgaaacaagccaccaccgttcattgatg |
311 |
Q |
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| T |
37596927 |
gatgactttggcatttcccaaaccgaatactatgaatgaaggaaagtatccacttgaaattcctactttccgaaacaagccaccaccgttcattgatg |
37597024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0293 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0293
Description:
Target: scaffold0293; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 99
Target Start/End: Original strand, 1063 - 1104
Alignment:
| Q |
58 |
tttgaaactatttaacatatattccataattatttggcaccc |
99 |
Q |
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| T |
1063 |
tttgaaactatttaatatatattccataattatttgacaccc |
1104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 99
Target Start/End: Complemental strand, 5232352 - 5232311
Alignment:
| Q |
58 |
tttgaaactatttaacatatattccataattatttggcaccc |
99 |
Q |
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| T |
5232352 |
tttgaaactgtttaatatatattccataaatatttggcaccc |
5232311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 106
Target Start/End: Original strand, 50432565 - 50432613
Alignment:
| Q |
58 |
tttgaaactatttaacatatattccataattatttggcaccctcaacaa |
106 |
Q |
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| T |
50432565 |
tttgaaaccatttaatatatattccatatatatttggcacccccaacaa |
50432613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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