View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16852_high_3 (Length: 298)
Name: NF16852_high_3
Description: NF16852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16852_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 13 - 279
Target Start/End: Original strand, 31346942 - 31347208
Alignment:
| Q |
13 |
gagagaagaaaaagtttgatgaatttccgaccattgtagtttggttcaaatcggcagctattacttcagctaaaggataaacatccatttgctttgaaga |
112 |
Q |
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| T |
31346942 |
gagagaagaaaaagtttgacgaatttccgaccattgaggtttggttcaaatcagcagctattacttcagctaaaggataaacatccatttgttttgaaga |
31347041 |
T |
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| Q |
113 |
ggatgaaatgttcaagatactagtttcattgttatgaacaatgttgtcatcttgtgattttggtttcaccttgttttgagagaaatcagaaagagtggtt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31347042 |
ggatgaaatgttcaagatactagtttcattgttatgaacaatgttgtcatcttgtgattttggtttcaccttgttttgagagaaatcagaaagagtggtt |
31347141 |
T |
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| Q |
213 |
tggttttcactattgtatggagaagaatccaataattgaggcaatagagattcattagtatttgatg |
279 |
Q |
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| T |
31347142 |
tggttttcactattgtatggagaagaatccaataattgaggcaatagagattcattagtatttgatg |
31347208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 13 - 279
Target Start/End: Original strand, 31357602 - 31357868
Alignment:
| Q |
13 |
gagagaagaaaaagtttgatgaatttccgaccattgtagtttggttcaaatcggcagctattacttcagctaaaggataaacatccatttgctttgaaga |
112 |
Q |
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| T |
31357602 |
gagagaagaaaaagtttgacgaattcccgaccattgaggtttggttcaaatcagcagctattacttcagctaaaggataaacatccaattgttttgaaga |
31357701 |
T |
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| Q |
113 |
ggatgaaatgttcaagatactagtttcattgttatgaacaatgttgtcatcttgtgattttggtttcaccttgttttgagagaaatcagaaagagtggtt |
212 |
Q |
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| T |
31357702 |
ggatgaaatgttcaagatactagtttcattgttatgaacaatgttgtcatcttgtgattttggtttcaccttgttttgagagaaatcagaaagagtggtt |
31357801 |
T |
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| Q |
213 |
tggttttcactattgtatggagaagaatccaataattgaggcaatagagattcattagtatttgatg |
279 |
Q |
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| T |
31357802 |
tggttttcactattgtatggagaagaatccaataattgaggcaatagagattcattagtatttgatg |
31357868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 94; Significance: 7e-46; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 19 - 179
Target Start/End: Complemental strand, 2920430 - 2920267
Alignment:
| Q |
19 |
agaaaaagtttgatgaatttccgaccattgtagtttggttcaaatcggcagctattacttcagctaaagg---ataaacatccatttgctttgaagagga |
115 |
Q |
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| T |
2920430 |
agaaaaagtttgatgaattcccgaccattgaggtttggttggaatcagcaactgttccttcagcgaaagggttataaacatccatttgttttgaagagga |
2920331 |
T |
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| Q |
116 |
tgaaatgttcaagatactagtttcattgttatgaacaatgttgtcatcttgtgattttggtttc |
179 |
Q |
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| T |
2920330 |
tgaaatgttcaagatacaagtttcattgttatgaacaatgttgtcatcttgtgtttttgatttc |
2920267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 15 - 179
Target Start/End: Complemental strand, 2925816 - 2925652
Alignment:
| Q |
15 |
gagaagaaaaagtttgatgaatttccgaccattgtagtttggttcaaatcggcagctattacttcagctaaaggataaacatccatttgctttgaagagg |
114 |
Q |
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| T |
2925816 |
gagaagaaaaagtttgaagaattcccggccattgaggttaggttgggatcagccactgttgctccagctaaagggtaaacatccatttgttttgaagacg |
2925717 |
T |
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| Q |
115 |
atgaaatgttcaagatactagtttcattgttatgaacaatgttgtcatcttgtgattttggtttc |
179 |
Q |
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| T |
2925716 |
atgaaatgttcaagatacttgtttcattgttatgaacaatgttgtcatattgtgtttttggtttc |
2925652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 26 - 179
Target Start/End: Complemental strand, 29272460 - 29272304
Alignment:
| Q |
26 |
gtttgatgaatttccgaccattgtagtttggttcaaatcggcagctattacttcagctaaagg---ataaacatccatttgctttgaagaggatgaaatg |
122 |
Q |
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|||||||||||| |||||||||| |||||||| |||| ||| | || ||||||||||||| ||||||||||||||| |||||||||||||||||| |
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| T |
29272460 |
gtttgatgaattcccgaccattgaggtttggttggaatcagcaattgttgcttcagctaaagggttataaacatccatttgttttgaagaggatgaaatg |
29272361 |
T |
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| Q |
123 |
ttcaagatactagtttcattgttatgaacaatgttgtcatcttgtgattttggtttc |
179 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
29272360 |
ttcaagatactagtttcattgttgtgaacaatgttgtcatcttgtgtttttggtttc |
29272304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 20 - 179
Target Start/End: Complemental strand, 9447837 - 9447671
Alignment:
| Q |
20 |
gaaaaagtttgatgaatttccgaccattgtagtttggttcaaatcggcagctattacttcagctaaagg---ataaacatccatttgctttgaagaggat |
116 |
Q |
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|||||||||||||||||| ||||| |||| |||||||| ||| ||| | || ||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
9447837 |
gaaaaagtttgatgaattcccgacaattgaggtttggttggaataagcaattgttgcttcagctaaagggttataaacatccatttgttttgaagaggat |
9447738 |
T |
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| Q |
117 |
gaaatgttcaagata----ctagtttcattgttatgaacaatgttgtcatcttgtgattttggtttc |
179 |
Q |
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| T |
9447737 |
gaaatgttcaagatatatactagtttcattgttatgaacaatgttgtcgtcttgtgtttttggtttc |
9447671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 230 - 279
Target Start/End: Complemental strand, 9447611 - 9447562
Alignment:
| Q |
230 |
tggagaagaatccaataattgaggcaatagagattcattagtatttgatg |
279 |
Q |
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||||||| ||||||| ||| |||||||||||||| ||||||||||||||| |
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| T |
9447611 |
tggagaataatccaacaatggaggcaatagagatgcattagtatttgatg |
9447562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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