View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16852_low_1 (Length: 429)
Name: NF16852_low_1
Description: NF16852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16852_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 126 - 411
Target Start/End: Complemental strand, 6966183 - 6965898
Alignment:
| Q |
126 |
atttgtatgagttccaattgcaatcagagttataggacctgcagatattttgtcaatcagaacttgctgagcagttggttgtcgtagcggagtatatttc |
225 |
Q |
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| T |
6966183 |
atttgtatgagttccaattgcaatcagagttataggacctgcagatattttgtcaatcagaacttgctgagcagttggttggcgtagcggagtatatttc |
6966084 |
T |
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| Q |
226 |
ctctttccctaattccatgattaaaatcaacaagaaaatgatcagtactagttattaaaatacnnnnnnntgaataaggttcatgcaattgagtttgtat |
325 |
Q |
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| T |
6966083 |
ctctttccctaattccatgattaaaatcaacaagaaaatgatcagtactagttattaaaatacaaacaaatgaataaggttcatgcaattgagtttgtat |
6965984 |
T |
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| Q |
326 |
cagccgcatttaactataactctctgcaatataaaagaatcgcgagatgatcaaccatattatacccgtggaaggaaagctttacg |
411 |
Q |
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| T |
6965983 |
cagccgcatttaactataactctctgcaatataaaagaatcgtgagatgatcaaccatattatacccgtggaaggaaagctttacg |
6965898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 15 - 284
Target Start/End: Complemental strand, 6956122 - 6955853
Alignment:
| Q |
15 |
agatgaagcatttttggtgcaacaagtttttgaccttataccaccacccatgacgtaaacatgttccacatttttctttaggtgtggattattcataagg |
114 |
Q |
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| T |
6956122 |
agatgaagcatttttggtgcaacaagtttttgaccttataacaccacccatgatgtaaacatgttccacatttttctttaggtgtggattattcataagg |
6956023 |
T |
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| Q |
115 |
aaaatggctaaatttgtatgagttccaattgcaatcagagttataggacctgcagatattttgtcaatcagaacttgctgagcagttggttgtcgtagcg |
214 |
Q |
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| T |
6956022 |
aaaatggctaaatttgtatgcgcgccagtcacaatcagagttataggacctgcagatattttgtcaatcagaacttgctgagtagttggttgtcgtagcg |
6955923 |
T |
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| Q |
215 |
gagtatatttcctctttccctaattccatgattaaaatcaacaagaaaatgatcagtactagttattaaa |
284 |
Q |
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| T |
6955922 |
gagtatatttcctttttccctaattccatgattaaaatcagcaagaaaatgtttagtactagttattaaa |
6955853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 315 - 411
Target Start/End: Complemental strand, 6955651 - 6955556
Alignment:
| Q |
315 |
tgagtttgtatcagccgcatttaactataactctctgcaatataaaagaatcgcgagatgatcaaccatattatacccgtggaaggaaagctttacg |
411 |
Q |
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| T |
6955651 |
tgagtttgtattagtcacatttaacttcaactctcttcaaaatgaa-gaatcacgaaacgaccaaccatattatacctgtggaaggaaagctttacg |
6955556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 8e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 44 - 235
Target Start/End: Original strand, 49115934 - 49116125
Alignment:
| Q |
44 |
ttgaccttataccaccacccatgacgtaaacatgttccacatttttctttaggtgtggattattcataaggaaaatggctaaatttgtatgagttccaat |
143 |
Q |
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| T |
49115934 |
ttgaccttacacctccacccattatataaatatgttccacatttttcttaaggtgtggattattcattaggaaaattgcaacatttgtatgagctcccat |
49116033 |
T |
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| Q |
144 |
tgcaatcagagttataggacctgcagatattttgtcaatcagaacttgctgagcagttggttgtcgtagcggagtatatttcctctttccct |
235 |
Q |
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| T |
49116034 |
cataaacaaagttgtgggacctgcagacactttttcaatcaacacttgttgagcagttggttgctctagtggtgtatatttcctttttccct |
49116125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 44 - 246
Target Start/End: Original strand, 49103636 - 49103838
Alignment:
| Q |
44 |
ttgaccttataccaccacccatgacgtaaacatgttccacatttttctttaggtgtggattattcataaggaaaatggctaaatttgtatgagttccaat |
143 |
Q |
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| T |
49103636 |
ttgatcttacacctccacccattatataaatatgttccacatttttcttaaggtgtggattattcattaggaaaattgcaacatttgtatgagctcccat |
49103735 |
T |
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| Q |
144 |
tgcaatcagagttataggacctgcagatattttgtcaatcagaacttgctgagcagttggttgtcgtagcggagtatatttcctctttccctaattccat |
243 |
Q |
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| T |
49103736 |
cataaacaaagttgtgggacctgcagacactttttcaatcaacacttgttgagcagttggttgctctagtggtgtatatttcctttttccctgatgccat |
49103835 |
T |
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| Q |
244 |
gat |
246 |
Q |
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||| |
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| T |
49103836 |
gat |
49103838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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