View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16852_low_2 (Length: 299)
Name: NF16852_low_2
Description: NF16852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16852_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 23 - 298
Target Start/End: Complemental strand, 43812932 - 43812657
Alignment:
| Q |
23 |
gccatatcattctcctccactaatctgttcatcccaactacactatccagctcttgttggagatttttcattactcttggatgcctcatgagctcggata |
122 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43812932 |
gccatatcattctcctccactaatttgttcatcccaactacactatccagctcttgttggagatttttcattactcttggatgcctcatgagctcggata |
43812833 |
T |
|
| Q |
123 |
aagcccactccacaatggttgcagaagtgtcaaatgccgcggcaatcatgtctaaggctatagcctttatgtttgttcgatcaatgacatggctttgttc |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43812832 |
aagcccactccacaatggttgcagaagtgtcaaatgccgcggcgatcatgtctaaggctatagcctttatgtttgttcgatcaatgacatggctttgttc |
43812733 |
T |
|
| Q |
223 |
gtcagagggatcaatcgtctggtgcgtcagtgagagtagaatgtctatgaagtttttgtgtttctgcccttcattt |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43812732 |
gtcagagggatcaatcgtctggtgcgtcagtgagagtagaatgtctatgaagtttttgtgtttctgcccttcattt |
43812657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 28 - 294
Target Start/End: Complemental strand, 43802358 - 43802092
Alignment:
| Q |
28 |
atcattctcctccactaatctgttcatcccaactacactatccagctcttgttggagatttttcattactcttggatgcctcatgagctcggataaagcc |
127 |
Q |
| |
|
|||||| || || |||||| ||||| |||||| || |||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
43802358 |
atcattttcttctactaatttgttcgccccaaccacgttatctagctcttgttggagatttttcatcactcttggatgcctcatgagctctgataaagcc |
43802259 |
T |
|
| Q |
128 |
cactccacaatggttgcagaagtgtcaaatgccgcggcaatcatgtctaaggctatagcctttatgtttgttcgatcaatgacatggctttgttcgtcag |
227 |
Q |
| |
|
|||||||||| ||||| ||||| ||||||||| ||||||||||||||| || |||||||||||||||||||||||||| ||||||| ||| |||||||| |
|
|
| T |
43802258 |
cactccacaaccgttgcggaagtttcaaatgccccggcaatcatgtctagggatatagcctttatgtttgttcgatcaacgacatgggttttttcgtcag |
43802159 |
T |
|
| Q |
228 |
agggatcaatcgtctggtgcgtcagtgagagtagaatgtctatgaagtttttgtgtttctgcccttc |
294 |
Q |
| |
|
||||||| |||| |||||| ||||||||||||||||||||| ||||| || || ||||||||||| |
|
|
| T |
43802158 |
agggatcgatcggttggtgcatcagtgagagtagaatgtctacgaagtccttatgcttctgcccttc |
43802092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 132
Target Start/End: Complemental strand, 29944776 - 29944727
Alignment:
| Q |
83 |
agatttttcattactcttggatgcctcatgagctcggataaagcccactc |
132 |
Q |
| |
|
||||||||||| |||||||||||||| | || ||||||||||||||||| |
|
|
| T |
29944776 |
agatttttcatcactcttggatgccttaaaagttcggataaagcccactc |
29944727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University