View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16853_high_22 (Length: 253)
Name: NF16853_high_22
Description: NF16853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16853_high_22 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 242
Target Start/End: Complemental strand, 49546773 - 49546551
Alignment:
| Q |
19 |
cattaaacctaaggaagaaatactatggaatgatggactggccaaccccatttatagcactttattccaatatatttttcaccccatactcattatatta |
118 |
Q |
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| T |
49546773 |
cattaaacctaaagaagaaatactatggaatgatggactggccaaccccatttatagcactttattccaatatatttt-caccccatactcattatatta |
49546675 |
T |
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| Q |
119 |
ggattctttattttccctgttttccaactcagcatacttctcattcagtccatcttcttccatttatccatctcctgtgacccttgctatatctttctag |
218 |
Q |
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| T |
49546674 |
ggattctttattttccctgttttccaactcagcatacttctcattcagtccatcttcttccatttatctatctcctgtgacccttgctatatctttctag |
49546575 |
T |
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| Q |
219 |
aataaacatgagttgtggtcctat |
242 |
Q |
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|||||||||||||||||||||||| |
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| T |
49546574 |
aataaacatgagttgtggtcctat |
49546551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 116 - 234
Target Start/End: Complemental strand, 49443753 - 49443632
Alignment:
| Q |
116 |
ttaggattctttattttccctgttttccaactcagcatacttctcattcagtccatcttctt---ccatttatccatctcctgtgacccttgctatatct |
212 |
Q |
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||||||||||||||||||||| |||||||||||| ||||||| |||||||| | ||| |||| ||||||||| ||||| |||| |||||||||| ||| |
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| T |
49443753 |
ttaggattctttattttcccttttttccaactcaacatacttttcattcagcctatcctctttttccatttatctatctcatgtgccccttgctatctct |
49443654 |
T |
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| Q |
213 |
ttctagaataaacatgagttgt |
234 |
Q |
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| T |
49443653 |
ttctagaataaacatgagttgt |
49443632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 198 - 242
Target Start/End: Complemental strand, 47988551 - 47988507
Alignment:
| Q |
198 |
acccttgctatatctttctagaataaacatgagttgtggtcctat |
242 |
Q |
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| T |
47988551 |
acccttgctatctctttctaggataaacatgagttgtgatcctat |
47988507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 213 - 242
Target Start/End: Original strand, 47872680 - 47872709
Alignment:
| Q |
213 |
ttctagaataaacatgagttgtggtcctat |
242 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
47872680 |
ttctagaataaacatgagttgtggtcctat |
47872709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 119 - 242
Target Start/End: Original strand, 14961990 - 14962116
Alignment:
| Q |
119 |
ggattctttattttccctgttttccaactcagcatacttctcattcagtccatcttc---ttccatttatccatctcctgtgacccttgctatatctttc |
215 |
Q |
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||||||||||||| |||| |||||| ||||||||||||||||||||| ||||| || | ||| ||||| |||| ||||| || ||||||| |||||| |
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| T |
14961990 |
ggattctttatttcccctattttcctactcagcatacttctcattcaacccatcctctcatgccacttatctatcttctgtgtcctttgctatctctttc |
14962089 |
T |
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| Q |
216 |
tagaataaacatgagttgtggtcctat |
242 |
Q |
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| T |
14962090 |
tggaataaacttgacctgtggtcctat |
14962116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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