View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16853_high_23 (Length: 242)
Name: NF16853_high_23
Description: NF16853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16853_high_23 |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 15 - 226
Target Start/End: Original strand, 39187716 - 39187927
Alignment:
| Q |
15 |
gaacaaaagcatgtcatggcatgtagaccatatagttggtttctatatgaaaacgtttctacatatcaaagatagagttgaccctgtcaatttatcatga |
114 |
Q |
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| T |
39187716 |
gaacaaaagcatgtcatggcatgtagaccatatagttagtttctatatgaaaacgtttctacatatcaaagatagagttgaccctgtcaatttatcatga |
39187815 |
T |
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| Q |
115 |
gtttccattctttccaattagacattctacatagagtaagaaactaaaagaatcctgttattcatttacaaggaaacatgttagc--gttttcgctacca |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||| |
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| T |
39187816 |
gtttccattctttccaattagacattctacatagagtaagaaactaaaagaatcctgttattcatttacaaggaa--atgttagcaggttttcactacca |
39187913 |
T |
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| Q |
213 |
catatctacacatt |
226 |
Q |
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|||||||||||||| |
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| T |
39187914 |
catatctacacatt |
39187927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 26 - 226
Target Start/End: Complemental strand, 39145795 - 39145595
Alignment:
| Q |
26 |
tgtcatggcatgtagaccatatagttggtttctatatgaaaacgtttctacatatcaaagatagagttgaccctgtcaatttatcatgagtttccattct |
125 |
Q |
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|||||||||||| |||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39145795 |
tgtcatggcatggagaccatatagtcagtttctacatgaaaatgtttctacatatcaaagatagagttgaccctgtcaatttatcatgagtttccattct |
39145696 |
T |
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| Q |
126 |
ttccaattagacattctacatagagtaagaaactaaaagaatcctgttattcatttacaaggaaacatgttagcgttttcgctaccacatatctacacat |
225 |
Q |
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| T |
39145695 |
ttctaattagacattctacatagagtaatacactaaaagaatcctgttattcatttacaaggaaacatgttagcgttttcgctaccacatatctacacat |
39145596 |
T |
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| Q |
226 |
t |
226 |
Q |
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| T |
39145595 |
t |
39145595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 106 - 226
Target Start/End: Original strand, 39470779 - 39470900
Alignment:
| Q |
106 |
ttatcatgagtttccattctttccaattagacattctacatagagtaagaaactaaaagaatcctgt-tattcatttacaaggaaacatgttagc--gtt |
202 |
Q |
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||||||||||||| ||||||||||||||||| ||| ||| |||||||||||| |||||||| ||| |||||||||||||||||||||||||| ||| |
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| T |
39470779 |
ttatcatgagttttcattctttccaattagatattttac--agagtaagaaacagaaagaatcttgtgaattcatttacaaggaaacatgttagcaggtt |
39470876 |
T |
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| Q |
203 |
ttcgctaccacatatctacacatt |
226 |
Q |
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||||||||||| || ||| ||||| |
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| T |
39470877 |
ttcgctaccacgtaactatacatt |
39470900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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