View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16853_high_29 (Length: 204)
Name: NF16853_high_29
Description: NF16853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16853_high_29 |
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Alignment Details
Target: chr3 (Bit Score: 158; Significance: 3e-84; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 16 - 185
Target Start/End: Original strand, 47242432 - 47242601
Alignment:
| Q |
16 |
atgaatcacagcaagtgcaaataaacataattagtccaattaacttcatttcaacaaggctttagatattcaaatttacaataaaaaatgtatttacttt |
115 |
Q |
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| T |
47242432 |
atgaatcacagcaagtgaaaataaacagaattagtccaattaacttcatttcaacaaggctttagatattcaaattcacaataaaaaatgtatttacttt |
47242531 |
T |
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| Q |
116 |
agaaatgtgatgacattagggttgcccatttcaaagttcagggttttgagtatgtcagcttccatcttca |
185 |
Q |
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| T |
47242532 |
agaaatgtgatgacattagggttgcccatttcaaagttcagggttttgagtatgtcagcttccatcttca |
47242601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 31 - 180
Target Start/End: Original strand, 47248893 - 47249041
Alignment:
| Q |
31 |
tgcaaataaacataattagtccaattaacttcatttcaacaaggctttagatattcaaatttacaataaaaaatgtatttactttagaaatgtgatgaca |
130 |
Q |
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| T |
47248893 |
tgcacataaacatggtcagtccaattat-ttcatttcagcaaggatttatatattcaactttacagtaataaatgtccttacttaagaaatgttatcaca |
47248991 |
T |
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| Q |
131 |
ttagggttgcccatttcaaagttcagggttttgagtatgtcagcttccat |
180 |
Q |
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| T |
47248992 |
ttagggttgcccatttcaaagtttagggacttaagtatgtcagcttccat |
47249041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 155
Target Start/End: Original strand, 47253696 - 47253834
Alignment:
| Q |
17 |
tgaatcacagcaagtgcaaataaacataattagtccaattaacttcatttcaacaaggctttagatattcaaatttacaataaaaaatgtatttacttta |
116 |
Q |
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| T |
47253696 |
tgaaacacagtaattgcacataaacacaattaatccaattaacttcatttcaattaggctttagatattgaaattaacaatattaacagtccttacttga |
47253795 |
T |
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| Q |
117 |
gaaatgtgatgacattagggttgcccatttcaaagttca |
155 |
Q |
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| T |
47253796 |
gaaaagtgttaacatgagggttgcccatttcaaaattca |
47253834 |
T |
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