View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16853_high_3 (Length: 438)
Name: NF16853_high_3
Description: NF16853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16853_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 19 - 431
Target Start/End: Complemental strand, 53118255 - 53117843
Alignment:
| Q |
19 |
acaatgtcatctgatctgctttgcatagaattatggaacattcttcactcacaatatcagtcatttgcttaataagttgtggttatgattctaagtttgg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53118255 |
acaatgtcatctgatctgctttgcatagaattatggaacattcttcactcacaatatcagtcatttgcttaataagttgtggttatgattctaagtttgg |
53118156 |
T |
|
| Q |
119 |
tccatattgcagcttgtaagctacattttggaagaaaaacgtgtcagtcctacattcatcataaatcatcccgagatcaggagtcctttggcaaagtggc |
218 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
53118155 |
tc-atattgcagcttgtaagctacattttggaagaaacacgtgtcagtcctacattcatcataaatcatcccgagatcatgagtcctttggcaaagtggc |
53118057 |
T |
|
| Q |
219 |
acagatcaaaaccaggtctgacgaagcgtttttaattgttcgtcaataagcatgaagttaacaacttttttattc-ttgtcactgtttttctgttaattt |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
53118056 |
acagatcaaaaccaggtctgacgaagcgtttttaattgttcgtcaataagcatgaagttaacaacttttttattctttgtcactgtttttctgttaattt |
53117957 |
T |
|
| Q |
318 |
tcagctttgcaatgcatatactgaattgaatgatccagtagtccaatgtcagagatttgccgaacaactcaaggtattatgtaaagattagcttactaaa |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
53117956 |
tcagctttgcaatgcatatactgaattgaatgatccagtagtgcaacgtcagagatttgccgaacaactcaaggtatgatgtaaagattagcgtactaaa |
53117857 |
T |
|
| Q |
418 |
ttaagtctgtgctc |
431 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
53117856 |
ttaagtctgtgctc |
53117843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 21 - 276
Target Start/End: Complemental strand, 53108928 - 53108673
Alignment:
| Q |
21 |
aatgtcatctgatctgctttgcatagaattatggaacattcttcactcacaatatcagtcatttgcttaataagttgtggtta-tgattctaagtttggt |
119 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||| |||||||| ||||||||||| ||||||||| |||||||| |||||||| |||||||||||||||| |
|
|
| T |
53108928 |
aatgtgatctgatctgctttgcatagaaatatgggacattcttaactcacaatattagtcatttgattaataagctgtggttaatgattctaagtttggt |
53108829 |
T |
|
| Q |
120 |
ccatattgcagcttgtaagctacattttggaagaaaaacgtgtcagtcctacattcatcataaatcatcccgagatcaggagtcctttggcaaagtggca |
219 |
Q |
| |
|
| | |||||||||||| | || |||||||||||| | |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
53108828 |
c-acattgcagcttgtcggacactttttggaagaaacatgtgtcaatcctacattcatcataaatcatcccgagatcatgagtcctttggcaaagtggca |
53108730 |
T |
|
| Q |
220 |
cagatcaaaaccaggtctgacgaagcgtttttaattgttcgtcaataagcatgaagt |
276 |
Q |
| |
|
||||| ||||||||| ||||| | |||||| ||||||||||||||||||||||||| |
|
|
| T |
53108729 |
cagattaaaaccaggcctgaccgaacgttttgaattgttcgtcaataagcatgaagt |
53108673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 273 - 416
Target Start/End: Complemental strand, 53113744 - 53113601
Alignment:
| Q |
273 |
aagttaacaacttttttattcttgtcactgtttttctgttaattttcagctttgcaatgcatatactgaattgaatgatccagtagtccaatgtcagaga |
372 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||| ||| |||||||| |
|
|
| T |
53113744 |
aagttaacaactttttgattcttgtcactgtttttctgttaactttcagctttccaatgcatatactgaattgaatgatcctgtagtgcaacgtcagaga |
53113645 |
T |
|
| Q |
373 |
tttgccgaacaactcaaggtattatgtaaagattagcttactaa |
416 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
53113644 |
tttgccgaacaactcaaggtatgatctaaagattagcttactaa |
53113601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 273 - 421
Target Start/End: Complemental strand, 53108632 - 53108484
Alignment:
| Q |
273 |
aagttaacaacttttttattcttgtcactgtttttctgttaattttcagctttgcaatgcatatactgaattgaatgatccagtagtccaatgtcagaga |
372 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
53108632 |
aagttaacaactttttgattcttgtcactgtttgtctgttaattttcagctttgcaacggctatactgaattgaatgatccagtagtgcaacgtcagaga |
53108533 |
T |
|
| Q |
373 |
tttgccgaacaactcaaggtattatgtaaagattagcttactaaattaa |
421 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||| ||| ||||||| |
|
|
| T |
53108532 |
tttgctgaacaactcaaggtatgatgtaaagattagcgtacaaaattaa |
53108484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 121 - 240
Target Start/End: Complemental strand, 53113932 - 53113813
Alignment:
| Q |
121 |
catattgcagcttgtaagctacattttggaagaaaaacgtgtcagtcctacattcatcataaatcatcccgagatcaggagtcctttggcaaagtggcac |
220 |
Q |
| |
|
|||||| ||||||| | || || |||||||||||| | |||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
53113932 |
catatttcagcttgcaggccactttttggaagaaacatgtgtcaatcctacattcatcataaatcatcccgagatcatgagccctttggcaaagtggcac |
53113833 |
T |
|
| Q |
221 |
agatcaaaaccaggtctgac |
240 |
Q |
| |
|
||| | |||||||| ||||| |
|
|
| T |
53113832 |
agaacgaaaccaggcctgac |
53113813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 273 - 421
Target Start/End: Complemental strand, 53126436 - 53126288
Alignment:
| Q |
273 |
aagttaacaacttttttattcttgtcactgtttttctgttaattttcagctttgcaatgcatatactgaattgaatgatccagtagtccaatgtcagaga |
372 |
Q |
| |
|
|||| |||| ||| || |||||| ||| |||||| ||||| |||||||||||||||||||||||||||| ||||| |||| || || ||| || ||||| |
|
|
| T |
53126436 |
aagtgaacagcttattgattcttctcattgttttcttgttacttttcagctttgcaatgcatatactgaactgaataatcctgttgtgcaacgtgagaga |
53126337 |
T |
|
| Q |
373 |
tttgccgaacaactcaaggtattatgtaaagattagcttactaaattaa |
421 |
Q |
| |
|
||||| ||||||||||||||| || |||| |||||||||||||||||| |
|
|
| T |
53126336 |
tttgctcaacaactcaaggtatgatataaatattagcttactaaattaa |
53126288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 128 - 276
Target Start/End: Complemental strand, 53126623 - 53126475
Alignment:
| Q |
128 |
cagcttgtaagctacattttggaagaaaaacgtgtcagtcctacattcatcataaatcatcccgagatcaggagtcctttggcaaagtggcacagatcaa |
227 |
Q |
| |
|
||||||||| || || |||||||||||| |||||| ||||||||||||||| ||||| ||||| || | |||||||||||| |||| ||||||| || |
|
|
| T |
53126623 |
cagcttgtaggccactttttggaagaaacgtgtgtcaatcctacattcatcatgaatcaccccgaaataatgagtcctttggccaagtcgcacagagaaa |
53126524 |
T |
|
| Q |
228 |
aaccaggtctgacgaagcgtttttaattgttcgtcaataagcatgaagt |
276 |
Q |
| |
|
||||||| ||||| |||||||| ||||||| ||||||||||||||||| |
|
|
| T |
53126523 |
aaccaggcctgaccgagcgttttgaattgtttgtcaataagcatgaagt |
53126475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 144 - 258
Target Start/End: Original strand, 15841087 - 15841201
Alignment:
| Q |
144 |
ttttggaagaaaaacgtgtcagtcctacattcatcataaatcatcccgagatcaggagtcctttggcaaagtggcacagatcaaaaccaggtctgacgaa |
243 |
Q |
| |
|
||||||| |||| | |||||| |||||||||||||||||| || || ||||| | |||||||||||| |||||||||||| |||||||||| ||||| | |
|
|
| T |
15841087 |
ttttggaggaaacatgtgtcaatcctacattcatcataaaccacccagagataatgagtcctttggcgaagtggcacagaacaaaaccaggcctgactga |
15841186 |
T |
|
| Q |
244 |
gcgtttttaattgtt |
258 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
15841187 |
acgttttgaattgtt |
15841201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University