View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16853_high_4 (Length: 436)
Name: NF16853_high_4
Description: NF16853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16853_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 16 - 364
Target Start/End: Complemental strand, 9009769 - 9009420
Alignment:
| Q |
16 |
gacaaaacagatctcttggctgtgtggtttgtaaatgcatagcaccttaaaaatcactcaacctcaataccaagtaaaacttgttatggccggaaaagaa |
115 |
Q |
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| T |
9009769 |
gacaaaacagatctcttggctgtgtggtttgtaaatgcatagcaccttaaaaatcactcaacctcaataccaagtaaaacttgttatggccggaaaacaa |
9009670 |
T |
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| Q |
116 |
ggaggctgtgggtgttattatggtcaaactttcaagtgtgcaacgctgctatttctatcgtgatctcctcgtgatactacttatcgctatgttaagcatt |
215 |
Q |
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| T |
9009669 |
ggaggttgtgggtgttattatggtcaaactttcaagtgtgcaacgctgctatttctatcgtgatctcctcgtgatactacttatcgctatgttaagcatt |
9009570 |
T |
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| Q |
216 |
ttccttataat-aaactagctcaaattggaatatcctaaaaatatgacggaatttgatgttnnnnnnnnnnnnnnnnnnnnnnntagaacggtgtaagca |
314 |
Q |
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| T |
9009569 |
ttccttataataaaactagctcaaattggaatatcttaaaaatatgacggaatttgatgttaaaaagaaaaaacagaaaacaaatagaaaggtgtaagca |
9009470 |
T |
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| Q |
315 |
ggaaaagacaagtcaagccaccagacctcatttgaggcataccattactt |
364 |
Q |
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| T |
9009469 |
ggaaaagacaagtcaagccaccagacctcatttgaggcataccattactt |
9009420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 83 - 157
Target Start/End: Complemental strand, 53311235 - 53311161
Alignment:
| Q |
83 |
taccaagtaaaacttgttatggccggaaaagaaggaggctgtgggtgttattatggtcaaactttcaagtgtgca |
157 |
Q |
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| T |
53311235 |
taccaattaaaacctgttatggccggaaaagaaggaggtaatgggtgttattaaggtcaaactttcaagtgtgca |
53311161 |
T |
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