View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16853_high_5 (Length: 435)
Name: NF16853_high_5
Description: NF16853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16853_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 30 - 419
Target Start/End: Original strand, 45393433 - 45393820
Alignment:
| Q |
30 |
tgttatcatagaggttcttctattattccaatctaattgtgaaactgatctaagatattggggattataaacggagttacaattgtaacaacctgttcta |
129 |
Q |
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| T |
45393433 |
tgttatcatagaggttcttctattattccaatctaattgtgaaactgatctaagatattggggattataaacggagttacaattgtaacaacctgttcta |
45393532 |
T |
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| Q |
130 |
ctccgccaatgttgactacaatcaaataccagatcacataattnnnnnnntggatgaataccacaaaacatttagagacgtcaagtaaaatcaatttgaa |
229 |
Q |
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| T |
45393533 |
ctccgccaatgttgactacaatcaaataccagatcacataattaaaaaaatggatgaataccacaaaacatttagagacgtcaagtaaaatcaatttgaa |
45393632 |
T |
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| Q |
230 |
acatacacatcttaatcctcggtaataattttacaggaaaagataggattaacaaaaaacaaataagcacatggtgtgnnnnnnnngaaagataatccaa |
329 |
Q |
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| T |
45393633 |
acatacatatcttaatcctcggtaataattttacaggaaaagataggattaacaaaaaacaaataagcacatggtgtg-aaaaaaagaaagataatccaa |
45393731 |
T |
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| Q |
330 |
attaaatttccataaagcaaaatctcgattgcagtatacaaagtgcagactgaaagcaagtaaataaaaataaaaagtgcagactgaaaa |
419 |
Q |
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| T |
45393732 |
att-aattaccataaagcaaaatctcgattgcagcatacaaagtgcagactgaaagcaagtaaataaaaataaaaagtgcagactgaaaa |
45393820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 182 - 273
Target Start/End: Original strand, 52740103 - 52740194
Alignment:
| Q |
182 |
gatgaataccacaaaacatttagagacgtcaagtaaaatcaatttgaaacatacacatcttaatcctcggtaataattttacaggaaaagat |
273 |
Q |
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| T |
52740103 |
gatgaataccatatgtcatttggagacgtcgtgtagaatcaattccaaatatacatatcttaatcctcagaaataattttataggaaaagat |
52740194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 378
Target Start/End: Original strand, 52740250 - 52740304
Alignment:
| Q |
324 |
atccaaattaaatttccataaagcaaaatctcgattgcagtatacaaagtgcaga |
378 |
Q |
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| T |
52740250 |
atccaaattaaattaccattaaacaaaatctcaactgcagtataaaaagtgcaga |
52740304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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