View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16853_low_1 (Length: 609)
Name: NF16853_low_1
Description: NF16853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16853_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 218 - 580
Target Start/End: Complemental strand, 40077050 - 40076691
Alignment:
| Q |
218 |
cctgtggagtactacgagggtagtgaatagaaccagaaatcaagactctacgtttaccatcaatgaccaatgctctatggtcataatccacattggtgca |
317 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40077050 |
cctgtggagtactacgagggtagtgaatagaaccagaaatcaagactctacgtttaccatcaatgaccaatgctctatggtcataatccacattggtgca |
40076951 |
T |
|
| Q |
318 |
aaacattgttggtaagaaccaaagcagaaccaacacaatttcagtggctctcatggtaatta-tttggaagaatgaatgaaccaaaaagatacaaagaaa |
416 |
Q |
| |
|
||||||| |||||| ||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||| | ||||||| |
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|
| T |
40076950 |
aaacatttttggtaggaaccaaagtagaaccaacacaatttcaaaggctctcatggtaattattttggaagaatgaatgaaccaaagagagaaaaagaaa |
40076851 |
T |
|
| Q |
417 |
ctcactagtgaaggaaagaatgaatgaactttggtttggtttggattatatgttacacatgtgtttgtgttttttggtcacgtgggtgtgaaatgtaagt |
516 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40076850 |
ctcactagtgaaggaaagaatgaatgaac-----tttggtttggattatatgttacacatgtgtttgtgttttttggtcacgtgggtgtgaaatgtaagt |
40076756 |
T |
|
| Q |
517 |
gatgatgg-ttgtaagaagaacaagggtaaggtgctacaagtactgtataacatgtgtaatgtgc |
580 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40076755 |
gatgatggtttgtaagaagaacaagagtaaggtgctacaagtactgtataacatgtgtaatgtgc |
40076691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 218 - 545
Target Start/End: Complemental strand, 40059036 - 40058713
Alignment:
| Q |
218 |
cctgtggagtactacgagggtagtgaatagaaccagaaatcaagactctacgtttaccatcaatgaccaatgctctatggtcataatccacattggtgca |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40059036 |
cctgtggagtactacgagggtagtgaatagaaccagaaatcaagactctacgtttaccatcaatgaccaatgctctatggtcataatccacattggtgca |
40058937 |
T |
|
| Q |
318 |
aaacattgttggtaagaaccaaagcagaaccaacacaatttcagtggctctcatggtaattattt-ggaagaatgaatgaaccaaaaagatacaaagaaa |
416 |
Q |
| |
|
||||||| |||||| ||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| | | ||||||| |
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|
| T |
40058936 |
aaacatttttggtaggaaccaaagtagaaccaacacaatttcaaaggctctcatggtaattattttggaagaatgaatgaaccaaaaatagagaaagaaa |
40058837 |
T |
|
| Q |
417 |
ctcactagtgaaggaaagaatgaatgaactttggtttggtttggattatatgttacacatgtgtttgtgttttttggtcacgtgggtgtgaaatgtaagt |
516 |
Q |
| |
|
|||||||| ||| ||| ||||||||||||||||||||||||| || |||||| ||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
40058836 |
ctcactagggaaagaaggaatgaatgaactttggtttggttt-----atttgttacgcatgtgtttgtattttttggtcacgtgggtgtgaaatgtaagt |
40058742 |
T |
|
| Q |
517 |
gatgatggttgtaagaagaacaagggtaa |
545 |
Q |
| |
|
||||||| || |||||||||||| |||| |
|
|
| T |
40058741 |
gatgatgctttgaagaagaacaagagtaa |
40058713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 218 - 538
Target Start/End: Complemental strand, 40084974 - 40084664
Alignment:
| Q |
218 |
cctgtggagtactacgagggtagtgaatagaaccagaaatcaagactctacgtttaccatcaatgaccaatgctctatggtcataatccacattggtgca |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
40084974 |
cctgtggagtactacgagggtagtgaatagaaccagaaatcaagactctacgtttaccatcaatgaccaatgctctatgatcataatccacattggtgca |
40084875 |
T |
|
| Q |
318 |
aaacattgttggtaagaaccaaagcagaaccaacacaatttcagtggctctcatggtaattatt-tggaagaatgaatgaaccaaaaagatacaaagaaa |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||| | ||||||| |
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|
| T |
40084874 |
aaacattgttggtaagaaccaaagcagaaccaacacaatttcagtggctctcatggtaattattctagaagaatgaatgatccaaaaagagaaaaagaaa |
40084775 |
T |
|
| Q |
417 |
ctcactagtgaaggaaagaatgaatgaactttggtttggtttggattatatgttacacatgtgtttgtgttttttggtcacgtgggtgtgaaatgtaagt |
516 |
Q |
| |
|
|||||||| |||||||||| || | |||||||||||||||| |||| |||| |||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
40084774 |
ctcactagggaaggaaagattgga----ctttggtttggtttggtttatttgtt--acatgtgt-----ttttttggtcacgtggatgtgaaatgtaagt |
40084686 |
T |
|
| Q |
517 |
gatgatggttgtaagaagaaca |
538 |
Q |
| |
|
||||||| || |||||||||| |
|
|
| T |
40084685 |
gatgatgcttagaagaagaaca |
40084664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 14 - 127
Target Start/End: Complemental strand, 40077250 - 40077137
Alignment:
| Q |
14 |
atgaagcaaagagaacctggcctttaacaggttcatgtaagttccagaaaacataggtttcaatgacatctagtcctccatctttagatttttgaataag |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
40077250 |
atgaagcaaagagaacctggcctttaacaggttcatgtaagttccagaaaacataggtttcaatgacatcaagtcctccatctttagatttctgaataag |
40077151 |
T |
|
| Q |
114 |
gtctggccacatct |
127 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
40077150 |
gtctggccacatct |
40077137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 14 - 127
Target Start/End: Complemental strand, 40059222 - 40059109
Alignment:
| Q |
14 |
atgaagcaaagagaacctggcctttaacaggttcatgtaagttccagaaaacataggtttcaatgacatctagtcctccatctttagatttttgaataag |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||| |
|
|
| T |
40059222 |
atgaagcaaagagaacctggcctttaacaggttcatgtaagttccagaaaacataggtttcaataacatcaagtcctccatctttagatttctgaataag |
40059123 |
T |
|
| Q |
114 |
gtctggccacatct |
127 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
40059122 |
gtctggccacatct |
40059109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 14 - 127
Target Start/End: Complemental strand, 40085160 - 40085047
Alignment:
| Q |
14 |
atgaagcaaagagaacctggcctttaacaggttcatgtaagttccagaaaacataggtttcaatgacatctagtcctccatctttagatttttgaataag |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||| |
|
|
| T |
40085160 |
atgaagcaaagagaacctggcctttaacaggttcatgtaagttccagaaaacataggtttcaataacatcaagtcctccatctttagatttctgaataag |
40085061 |
T |
|
| Q |
114 |
gtctggccacatct |
127 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
40085060 |
gtctggccacatct |
40085047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 25 - 127
Target Start/End: Original strand, 22016195 - 22016297
Alignment:
| Q |
25 |
agaacctggcctttaacaggttcatgtaagttccagaaaacataggtttcaatgacatctagtcctccatctttagatttttgaataaggtctggccaca |
124 |
Q |
| |
|
|||||||||||| ||| || || || | ||||||||||||||| || ||||| ||||| | ||| |||||||| ||||| ||||||||||| ||||||| |
|
|
| T |
22016195 |
agaacctggcctcgaaccggctcgtgcaggttccagaaaacataagtctcaatcacatcaattcccccatcttttgatttctgaataaggtcaggccaca |
22016294 |
T |
|
| Q |
125 |
tct |
127 |
Q |
| |
|
||| |
|
|
| T |
22016295 |
tct |
22016297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 218 - 302
Target Start/End: Original strand, 22016599 - 22016683
Alignment:
| Q |
218 |
cctgtggagtactacgagggtagtgaatagaaccagaaatcaagactctacgtttaccatcaatgaccaatgctctatggtcata |
302 |
Q |
| |
|
|||| ||||| |||||||| || ||||| |||||||| || | || || ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
22016599 |
cctgaggagtgctacgaggataatgaatggaaccagacataagaaccctgcgtttaccatcaatgaccaatgctctatgatcata |
22016683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 127
Target Start/End: Original strand, 44352747 - 44352819
Alignment:
| Q |
55 |
ttccagaaaacataggtttcaatgacatctagtcctccatctttagatttttgaataaggtctggccacatct |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| || ||||| | | |||||||||| | |||||||||| |
|
|
| T |
44352747 |
ttccagaaaacataggtttcaatgacatctattccaccttcttttgctgtttgaataagagcaggccacatct |
44352819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 127
Target Start/End: Complemental strand, 53322548 - 53322448
Alignment:
| Q |
25 |
agaacctggcctttaacaggttcatgtaagttccagaaaacataggtttcaatgacatctagtcctccatctttagatttttgaataaggtctggccaca |
124 |
Q |
| |
|
||||||| |||||||| |||| |||||||||||||||| ||||| ||| ||||||| | |||||||||| || |||||||||| |||| |||||||| |
|
|
| T |
53322548 |
agaacctaacctttaactggtttatgtaagttccagaaa-catag-tttggatgacataaaatcctccatctatatatttttgaatgaggtttggccaca |
53322451 |
T |
|
| Q |
125 |
tct |
127 |
Q |
| |
|
||| |
|
|
| T |
53322450 |
tct |
53322448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 42 - 127
Target Start/End: Complemental strand, 5450814 - 5450729
Alignment:
| Q |
42 |
aggttcatgtaagttccagaaaacataggtttcaatgacatctagtcctccatctttagatttttgaataaggtctggccacatct |
127 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||| ||||| | |||||| ||||||| || || ||||| ||||||||||||| |
|
|
| T |
5450814 |
aggttcatgtccattccagaaaacataggtttgaatcacatccaatcctccttctttagccttctggataagatctggccacatct |
5450729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 71 - 127
Target Start/End: Original strand, 35052914 - 35052970
Alignment:
| Q |
71 |
tttcaatgacatctagtcctccatctttagatttttgaataaggtctggccacatct |
127 |
Q |
| |
|
|||| ||||||| |||||||||||| || ||||||||||||||| ||||||||||| |
|
|
| T |
35052914 |
tttcgatgacataaagtcctccatctataaatttttgaataaggtttggccacatct |
35052970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 127
Target Start/End: Complemental strand, 9642550 - 9642493
Alignment:
| Q |
70 |
gtttcaatgacatctagtcctccatctttagatttttgaataaggtctggccacatct |
127 |
Q |
| |
|
||||||||| ||||||| || |||||||| | |||||||||||||| |||||||||| |
|
|
| T |
9642550 |
gtttcaatggcatctaggccaccatctttggccttttgaataaggtcaggccacatct |
9642493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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