View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16853_low_10 (Length: 425)
Name: NF16853_low_10
Description: NF16853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16853_low_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 9 - 418
Target Start/End: Complemental strand, 2786573 - 2786164
Alignment:
| Q |
9 |
gctttgatgatgttctccccgtctcaaagtgaaagccctaatcaaaagaatgttgatatgccaatgcactgtattcttgtggcagccagtaatccttatc |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2786573 |
gctttgatgatgttctccccgtctcaaagtgaaagccctaatcaaaagaatgttgatatgccaatgcactgtattcttgtggcagccagtaatccttatc |
2786474 |
T |
|
| Q |
109 |
cattgaagagaccaatatatgttcccaagaagaatgaatccattgactcggaatcaggtaaccagttttatgatgctgaagatgttgctaaagcatttcc |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2786473 |
cattgaagagaccaatatatgttcccaagaagaatgaatccattgactcggaatcaggtaaccagttttatgatgctgaagatgttgctaaagcatttcc |
2786374 |
T |
|
| Q |
209 |
gcagttttctatttctctatctgtcatctgcccaagaaatcttcccaaaatcaaagccatctacaatgctggagctgtcaatccacctgttgatgcgaaa |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
2786373 |
gcagttttctatttctctatctgtcatctgcccaagaaatcttcccaaaatcaaagccatctacaatgctggagctgtcaatccaccggttgatgctaaa |
2786274 |
T |
|
| Q |
309 |
ccccctcttgttttgatatcagaaggtttcagggaagcccgcactgccttgagtccttccggaacaacaaacttgccttcaaatcaaattcatgttaaag |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2786273 |
ccccctcttgttttgatatcagaaggtttcagggaagcccgcactgccttgagtccttccggaacaacaaacttgccttcaaatcaaattcatgttaaag |
2786174 |
T |
|
| Q |
409 |
ttgatgatgt |
418 |
Q |
| |
|
|||| ||||| |
|
|
| T |
2786173 |
ttgacgatgt |
2786164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 17 - 133
Target Start/End: Original strand, 22517146 - 22517262
Alignment:
| Q |
17 |
gatgttctccccgtctcaaagtgaaagccctaatcaaaagaatgttgatatgccaatgcactgtattcttgtggcagccagtaatccttatccattgaag |
116 |
Q |
| |
|
||||||| |||| |||||||||| | ||| ||||| ||||||| |||| | ||||||||||| ||||||||||||||||||||||| |||||| || |
|
|
| T |
22517146 |
gatgttccccccttctcaaagtggaggcctaaatcagcagaatgtggatacgaacatgcactgtatccttgtggcagccagtaatccttacccattgcag |
22517245 |
T |
|
| Q |
117 |
agaccaatatatgttcc |
133 |
Q |
| |
|
| ||| |||||||||| |
|
|
| T |
22517246 |
acaccggtatatgttcc |
22517262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 218 - 277
Target Start/End: Original strand, 22517462 - 22517521
Alignment:
| Q |
218 |
tatttctctatctgtcatctgcccaagaaatcttcccaaaatcaaagccatctacaatgc |
277 |
Q |
| |
|
|||||||||||| ||| ||||||||| | | ||||||||||| ||||||||||||||||| |
|
|
| T |
22517462 |
tatttctctatcggtcgtctgcccaaaacaacttcccaaaattaaagccatctacaatgc |
22517521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 212
Target Start/End: Original strand, 22517280 - 22517356
Alignment:
| Q |
136 |
agaagaatgaatccattgactcggaatcaggt-aaccagttttatgatgctgaagatgttgctaaagcatttccgcag |
212 |
Q |
| |
|
|||||| ||||||||||||||| || || || |||||||| ||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
22517280 |
agaagactgaatccattgactca-aaccaagtgaaccagttatatgatgctgaagctgttgctaaagcgtttccgcag |
22517356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 314 - 363
Target Start/End: Original strand, 22518232 - 22518281
Alignment:
| Q |
314 |
tcttgttttgatatcagaaggtttcagggaagcccgcactgccttgagtc |
363 |
Q |
| |
|
|||| |||| |||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
22518232 |
tcttattttaatatcagaaggttttagggaagcccgcagtgccttgagtc |
22518281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University