View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16853_low_12 (Length: 370)
Name: NF16853_low_12
Description: NF16853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16853_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 11 - 355
Target Start/End: Original strand, 3387107 - 3387451
Alignment:
| Q |
11 |
caaagggtaacgccacagtatctttggcttcttggagtgctaaattgtaccttagaagttgtttctgagagcgtgttccgtcgtccttgaccataagttg |
110 |
Q |
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| T |
3387107 |
caaagggtaacgccacggtatctttggcttcttggagtgctaaattgtaccttagaagttgttcctgagagcgtgttccgtcgtccttgaccataagttg |
3387206 |
T |
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| Q |
111 |
cgacaattctacgtcgaaaaggattggcacgactcnnnnnnnngtctccatgagaagagcgagttcatggagacaataataagagtcgcaataattagga |
210 |
Q |
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| T |
3387207 |
cgacaattctacgtcgaaaaggattggcacggctcttttttttgtctccatgagaagagcgagttcatggagacaataataagagtcgcaataattagga |
3387306 |
T |
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| Q |
211 |
gagaagacaacaacaccaaccttacaaccaaaaatggctttgtcgatactaggactgagtttgtcccctagtttcatgttcttacagtccaaaaacgatc |
310 |
Q |
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| T |
3387307 |
gagaagacaacaacaccaaccttacaatcaaaaatggctttgtcgatattaggactgagtttgtcccctagtttcatgttcttacagtccaaaaacgatc |
3387406 |
T |
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| Q |
311 |
tcactcccatacttgttaaatctctgtataataaccctgcaacat |
355 |
Q |
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| T |
3387407 |
tcactcccatacttgttaaatctttgtatagtaaccctgcaacat |
3387451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 37 - 353
Target Start/End: Original strand, 3393649 - 3393965
Alignment:
| Q |
37 |
gcttcttggagtgctaaattgtaccttagaagttgtttctgagagcgtgttccgtcgtccttgaccataagttgcgacaattctacgtcgaaaaggattg |
136 |
Q |
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| T |
3393649 |
gcttcttctagtgctaaactaaaccttcgaagctgtttcggagagcaagttccgtcgtccttgaccataagctgcgacggttttacgtcgaagaagatag |
3393748 |
T |
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| Q |
137 |
gcacgactcnnnnnnnngtctccatgagaagagcgagttcatggagacaataataagagtcgcaataattaggagagaagacaacaacaccaaccttaca |
236 |
Q |
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| T |
3393749 |
gaacgactcttttttttgtctccatcagaagagcgagttcgtggagacaataataagagtcacaataacgaggagagaacacggtaacaccaaccttaca |
3393848 |
T |
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| Q |
237 |
accaaaaatggctttgtcgatactaggactgagtttgtcccctagtttcatgttcttacagtccaaaaacgatctcactcccatacttgttaaatctctg |
336 |
Q |
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| T |
3393849 |
accaataattgctttatcgatatgatgaaatagtttgtctcctggtttcatgttcatactgtccaaaaacgatctcactcccatgtttgttaaatctttg |
3393948 |
T |
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| Q |
337 |
tataataaccctgcaac |
353 |
Q |
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| T |
3393949 |
tataataaccctgcaac |
3393965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 157 - 239
Target Start/End: Complemental strand, 35761698 - 35761616
Alignment:
| Q |
157 |
tccatgagaagagcgagttcatggagacaataataagagtcgcaataattaggagagaagacaacaacaccaaccttacaacc |
239 |
Q |
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|||||||||||||| || |||||||||||| |||||||||| |||||| | ||||| || ||| |||||||||| || ||||| |
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| T |
35761698 |
tccatgagaagagcaagctcatggagacaaaaataagagtcacaataagttggagaaaacacagcaacaccaactttgcaacc |
35761616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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