View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16853_low_13 (Length: 363)
Name: NF16853_low_13
Description: NF16853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16853_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 343; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 9999317 - 9998963
Alignment:
| Q |
1 |
ctcgtagaataccttggtttctttgtcaactgcgttttttatagcactcagaattggagtacctgtatattagttaagcaatgttaacattgtatgttat |
100 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9999317 |
ctcgtagaataccttggtttctttgtcgactgcgttttttatagcactcagaattggagtacctgtatattagttaagcaatgttaacattgtatgttat |
9999218 |
T |
|
| Q |
101 |
gaatatcagtactgtcaattgtaaatcgcggaaaatagctgttttgtataccagtggtgatgtcgttgccactttgtccttgccattgaatggtccatcc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
9999217 |
gaatatcagtactgtcaattgtaaatcgcggaaaatagctgttttgtataccagtggtgatgttgttgccactttgtccttgccattgaatggtccatcc |
9999118 |
T |
|
| Q |
201 |
accacattgatatcctagattatcagcatgacttccagcaacaagtatttttgaagcctttttaggaagaggaagtatcggcttatcaacattttcacca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9999117 |
accacattgatatcctagattatcagcatgacttccagcaacaagtattttggaagcctttttaggaagaggaagtatcggcttatcaacattttcacca |
9999018 |
T |
|
| Q |
301 |
ttctttaatagtaccaatgatttcctcaccgcttccctagccaattccctatgct |
355 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9999017 |
ttctttaatagtaccaatgatttcctcaccgcttccctagccaattccctatgct |
9998963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 144 - 355
Target Start/End: Complemental strand, 10004890 - 10004679
Alignment:
| Q |
144 |
ttgtataccagtggtgatgtcgttgccactttgtccttgccattgaatggtccatccaccacattgatatcctagattatcagcatgacttccagcaaca |
243 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10004890 |
ttgtataccagtggtgatgttgttgccactttgtccttgccattgaatggtccatccaccacattgatatcctagattatcagcatgacttccagcaaca |
10004791 |
T |
|
| Q |
244 |
agtatttttgaagcctttttaggaagaggaagtatcggcttatcaacattttcaccattctttaatagtaccaatgatttcctcaccgcttccctagcca |
343 |
Q |
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|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
10004790 |
agtatttttgaagactttttaggaagaggaagtatcggcttatcaacattttcaccattctttaatagtaccaatgattttctcaccgcttccctagcca |
10004691 |
T |
|
| Q |
344 |
attccctatgct |
355 |
Q |
| |
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|||||||||||| |
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| T |
10004690 |
attccctatgct |
10004679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 146 - 355
Target Start/End: Complemental strand, 9992037 - 9991828
Alignment:
| Q |
146 |
gtataccagtggtgatgtcgttgccactttgtccttgccattgaatggtccatccaccacattgatatcctagattatcagcatgacttccagcaacaag |
245 |
Q |
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|
|||||||| | ||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
9992037 |
gtataccactagtgatgttgttgccactaagtccttgccactgaatggtccatccaccacattgatatcctagattatcagcatgacttccagcaacgag |
9991938 |
T |
|
| Q |
246 |
tatttttgaagcctttttaggaagaggaagtatcggcttatcaacattttcaccattctttaatagtaccaatgatttcctcaccgcttccctagccaat |
345 |
Q |
| |
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|||||||| ||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
9991937 |
tatttttggagcctttttaggaagaggaagaagcggcttatcagcattttcaccattctttaatagtaccaatgatttcctcacagcttccctagccaat |
9991838 |
T |
|
| Q |
346 |
tccctatgct |
355 |
Q |
| |
|
|||||||||| |
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|
| T |
9991837 |
tccctatgct |
9991828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 145 - 355
Target Start/End: Complemental strand, 10013427 - 10013217
Alignment:
| Q |
145 |
tgtataccagtggtgatgtcgttgccactttgtccttgccattgaatggtccatccaccacattgatatcctagattatcagcatgacttccagcaacaa |
244 |
Q |
| |
|
||||||||||| || |||| ||| |||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||| |
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| T |
10013427 |
tgtataccagtagtcatgttgtttccactttgtccttgccatgtaatggtccatccaccacattgatttcctatattatcagcatggcttccagcaacaa |
10013328 |
T |
|
| Q |
245 |
gtatttttgaagcctttttaggaagaggaagtatcggcttatcaacattttcaccattctttaatagtaccaatgatttcctcaccgcttccctagccaa |
344 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||| | ||| ||| ||||| |||||||||||||||||||| || ||||| |||||||| |
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| T |
10013327 |
gtatttttggagcctttttaggaagaggaagtatcggcttatcagaacttttaccgttcttcaatagtaccaatgatttcctaacagcttctctagccaa |
10013228 |
T |
|
| Q |
345 |
ttccctatgct |
355 |
Q |
| |
|
||| ||||||| |
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|
| T |
10013227 |
ttctctatgct |
10013217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 10005465 - 10005380
Alignment:
| Q |
1 |
ctcgtagaataccttggtttctttgtcaactgcgttttttatagcactcagaattggagtacctgtatattagttaagcaatgtta |
86 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||| |
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|
| T |
10005465 |
ctcgtagactaccttggtttctttgtcgactgcgtgttttatagcactcagaattggggtacctgtatatcagttaagcaatgtta |
10005380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 9992358 - 9992295
Alignment:
| Q |
5 |
tagaataccttggtttctttgtcaactgcgttttttatagcactcagaattggagtacctgtat |
68 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
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| T |
9992358 |
tagactaccttggtttctttgtcaactgtgttttttatagcactcagaattgtggtacctgtat |
9992295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 10013791 - 10013737
Alignment:
| Q |
16 |
ggtttctttgtcaactgcgttttttatagcactcagaattggagtacctgtatat |
70 |
Q |
| |
|
||||||||||||||||| |||||| |||||| ||||||||| ||||||||||||| |
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|
| T |
10013791 |
ggtttctttgtcaactgtgtttttaatagcattcagaattgtagtacctgtatat |
10013737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 177 - 272
Target Start/End: Original strand, 33354068 - 33354163
Alignment:
| Q |
177 |
tccttgccattgaatggtccatccaccacattgatatcctagattatcagcatgacttccagcaacaagtatttttgaagcctttttaggaagagg |
272 |
Q |
| |
|
||||||||||| ||||||||| |||||||| |||||||||||||||| ||||| ||||| || ||||||||||||| | |||||||||||||||| |
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|
| T |
33354068 |
tccttgccattcaatggtccagccaccacactgatatcctagattatttgcatggcttccggccacaagtatttttggaacctttttaggaagagg |
33354163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 163 - 272
Target Start/End: Original strand, 33347014 - 33347123
Alignment:
| Q |
163 |
tcgttgccactttgtccttgccattgaatggtccatccaccacattgatatcctagattatcagcatgacttccagcaacaagtatttttgaagcctttt |
262 |
Q |
| |
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||||||||||| ||||||||||| ||||||||| ||||| || |||| ||||||||||| ||||| ||||| || |||||||| |||| | |||||| |
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| T |
33347014 |
tcgttgccactgactccttgccattcaatggtccagccaccgcactgatgtcctagattatttgcatggcttccggccacaagtatctttggaacctttt |
33347113 |
T |
|
| Q |
263 |
taggaagagg |
272 |
Q |
| |
|
|||||||||| |
|
|
| T |
33347114 |
taggaagagg |
33347123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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