View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16853_low_14 (Length: 357)

Name: NF16853_low_14
Description: NF16853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16853_low_14
NF16853_low_14
[»] chr1 (11 HSPs)
chr1 (1-59)||(4015229-4015287)
chr1 (186-318)||(4570561-4570693)
chr1 (186-325)||(4015270-4015406)
chr1 (186-235)||(21855820-21855869)
chr1 (257-330)||(21855716-21855786)
chr1 (185-233)||(4017168-4017216)
chr1 (186-239)||(10218605-10218658)
chr1 (290-327)||(39379412-39379449)
chr1 (257-315)||(4017083-4017138)
chr1 (292-336)||(4366828-4366872)
chr1 (293-333)||(10218715-10218755)
[»] chr5 (2 HSPs)
chr5 (186-235)||(24331336-24331385)
chr5 (257-330)||(24331232-24331302)
[»] chr4 (3 HSPs)
chr4 (290-332)||(3561304-3561346)
chr4 (290-336)||(3565426-3565472)
chr4 (290-323)||(3557408-3557441)
[»] chr7 (5 HSPs)
chr7 (288-318)||(29880954-29880984)
chr7 (290-327)||(29431343-29431380)
chr7 (290-327)||(29884951-29884988)
chr7 (290-318)||(22021074-22021102)
chr7 (290-318)||(22036792-22036820)


Alignment Details
Target: chr1 (Bit Score: 59; Significance: 6e-25; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 4015287 - 4015229
Alignment:
Q  1 aaagttttcctgttgttcttgaccacgaacatgtgtgtttgagtggtactataaactgg 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4015287 aaagttttcctgttgttcttgaccacgaacatgtgtgtttgagtggtactataaactgg 4015229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 186 - 318
Target Start/End: Original strand, 4570561 - 4570693
Alignment:
Q  186 ctttgcctttggatgcgataattcaaccggaacttataaagtggtggcgttctgcaat-attaatcaacaaccagaggtgagagttctcaacttgggtgg 284  Q
    ||||| ||||||||| |||||||||| || |||||||||||||||||||| ||| ||| |  |  || || | |||||| ||||||||||| ||||||||    
T  4570561 ctttggctttggatgtgataattcaaacgaaacttataaagtggtggcgtactgtaatcaagagacagcatc-agaggtcagagttctcaatttgggtgg 4570659  T
Q  285 tcgtgatgtttggagaaatattgaaagttttcct 318  Q
    |  |||||||||||||||||||||||||||||||    
T  4570660 tgatgatgtttggagaaatattgaaagttttcct 4570693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 186 - 325
Target Start/End: Complemental strand, 4015406 - 4015270
Alignment:
Q  186 ctttgcctttggatgcgataattcaaccggaacttataaagtggtggcgttctg-caatattaatcaacaaccagaggtgagagttctcaacttgggtgg 284  Q
    ||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||  ||    |  |||| | |||| |||| |||||||||||||||||     
T  4015406 ctttgcctttggatgtgataattcaactggagcttataaagtggtggcgttctgtaaacgagagacaac-atcagatgtgaaagttctcaacttgggtg- 4015309  T
Q  285 tcgtgatgtttggagaaatattgaaagttttcctgttgttc 325  Q
       ||||||||||||||| ||||||||||||||||||||||    
T  4015308 --ttgatgtttggagaaacattgaaagttttcctgttgttc 4015270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 186 - 235
Target Start/End: Complemental strand, 21855869 - 21855820
Alignment:
Q  186 ctttgcctttggatgcgataattcaaccggaacttataaagtggtggcgt 235  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  21855869 ctttgcctttggatgtgataattcaaccggaacttataaagtggtggcgt 21855820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 330
Target Start/End: Complemental strand, 21855786 - 21855716
Alignment:
Q  257 cagaggtgagagttctcaacttgggtggtcgtgatgtttggagaaatattgaaagttttcctgttgttcctttt 330  Q
    |||||||||||||| ||||| |||||| |   |||||||||||||| || ||||||||||||||| ||||||||    
T  21855786 cagaggtgagagttatcaacatgggtgat---gatgtttggagaaacatcgaaagttttcctgttattcctttt 21855716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 233
Target Start/End: Complemental strand, 4017216 - 4017168
Alignment:
Q  185 gctttgcctttggatgcgataattcaaccggaacttataaagtggtggc 233  Q
    ||||||| |||||||| ||||||||||| | ||||||||||||||||||    
T  4017216 gctttgcatttggatgtgataattcaactgcaacttataaagtggtggc 4017168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 239
Target Start/End: Original strand, 10218605 - 10218658
Alignment:
Q  186 ctttgcctttggatgcgataattcaaccggaacttataaagtggtggcgttctg 239  Q
    |||||| |||||||| | ||||||||||||||  | ||||||||||||||||||    
T  10218605 ctttgcatttggatgtgttaattcaaccggaagctttaaagtggtggcgttctg 10218658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 327
Target Start/End: Complemental strand, 39379449 - 39379412
Alignment:
Q  290 atgtttggagaaatattgaaagttttcctgttgttcct 327  Q
    ||||||||||||||||||||||||| || |||||||||    
T  39379449 atgtttggagaaatattgaaagtttcccggttgttcct 39379412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 315
Target Start/End: Complemental strand, 4017138 - 4017083
Alignment:
Q  257 cagaggtgagagttctcaacttgggtggtcgtgatgtttggagaaatattgaaagtttt 315  Q
    ||||||||| ||||||||| ||||||| |   |||||||||||||||||||| ||||||    
T  4017138 cagaggtgaaagttctcaatttgggtgat---gatgtttggagaaatattgacagtttt 4017083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 336
Target Start/End: Complemental strand, 4366872 - 4366828
Alignment:
Q  292 gtttggagaaatattgaaagttttcctgttgttccttttcgtttg 336  Q
    ||||||||| ||||||||||||||||| |||||||| ||| ||||    
T  4366872 gtttggagagatattgaaagttttcctattgttcctcttcatttg 4366828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 333
Target Start/End: Original strand, 10218715 - 10218755
Alignment:
Q  293 tttggagaaatattgaaagttttcctgttgttccttttcgt 333  Q
    |||||||||||||||||| ||||||||| ||||||| ||||    
T  10218715 tttggagaaatattgaaacttttcctgtggttccttatcgt 10218755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 186 - 235
Target Start/End: Complemental strand, 24331385 - 24331336
Alignment:
Q  186 ctttgcctttggatgcgataattcaaccggaacttataaagtggtggcgt 235  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  24331385 ctttgcctttggatgtgataattcaaccggaacttataaagtggtggcgt 24331336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 330
Target Start/End: Complemental strand, 24331302 - 24331232
Alignment:
Q  257 cagaggtgagagttctcaacttgggtggtcgtgatgtttggagaaatattgaaagttttcctgttgttcctttt 330  Q
    |||||||||||||| ||||| |||||| |   |||||||||||||| || ||||||||||||||| ||||||||    
T  24331302 cagaggtgagagttatcaacatgggtgat---gatgtttggagaaacatcgaaagttttcctgttattcctttt 24331232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 290 - 332
Target Start/End: Complemental strand, 3561346 - 3561304
Alignment:
Q  290 atgtttggagaaatattgaaagttttcctgttgttccttttcg 332  Q
    ||||||||||||||||||||||||||||| |||||||| ||||    
T  3561346 atgtttggagaaatattgaaagttttcctattgttcctcttcg 3561304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 336
Target Start/End: Original strand, 3565426 - 3565472
Alignment:
Q  290 atgtttggagaaatattgaaagttttcctgttgttccttttcgtttg 336  Q
    ||||||||||||||||||||||||| || | ||||||| ||||||||    
T  3565426 atgtttggagaaatattgaaagtttcccggctgttcctcttcgtttg 3565472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 323
Target Start/End: Original strand, 3557408 - 3557441
Alignment:
Q  290 atgtttggagaaatattgaaagttttcctgttgt 323  Q
    ||||||||||||||||||||||||| ||||||||    
T  3557408 atgtttggagaaatattgaaagtttccctgttgt 3557441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 318
Target Start/End: Original strand, 29880954 - 29880984
Alignment:
Q  288 tgatgtttggagaaatattgaaagttttcct 318  Q
    |||||||||||||||||||||||||||||||    
T  29880954 tgatgtttggagaaatattgaaagttttcct 29880984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 327
Target Start/End: Complemental strand, 29431380 - 29431343
Alignment:
Q  290 atgtttggagaaatattgaaagttttcctgttgttcct 327  Q
    ||||||||||| ||||||||||||| ||||||||||||    
T  29431380 atgtttggagagatattgaaagtttccctgttgttcct 29431343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 327
Target Start/End: Original strand, 29884951 - 29884988
Alignment:
Q  290 atgtttggagaaatattgaaagttttcctgttgttcct 327  Q
    ||||||||||| |||||||||||||||| |||||||||    
T  29884951 atgtttggagagatattgaaagttttccagttgttcct 29884988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 318
Target Start/End: Original strand, 22021074 - 22021102
Alignment:
Q  290 atgtttggagaaatattgaaagttttcct 318  Q
    |||||||||||||||||||||||||||||    
T  22021074 atgtttggagaaatattgaaagttttcct 22021102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 318
Target Start/End: Original strand, 22036792 - 22036820
Alignment:
Q  290 atgtttggagaaatattgaaagttttcct 318  Q
    |||||||||||||||||||||||||||||    
T  22036792 atgtttggagaaatattgaaagttttcct 22036820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University