View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16853_low_16 (Length: 353)
Name: NF16853_low_16
Description: NF16853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16853_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 19 - 147
Target Start/End: Complemental strand, 46502511 - 46502383
Alignment:
| Q |
19 |
caaagagtctgacattaaggggtactcatgtgcttgtagcatggtttaagaacctcttactgagtgttctttaattgtacgaatttaaaaatcaccaata |
118 |
Q |
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| T |
46502511 |
caaagagtctgacattaaggggtactcatgtgcttgtagcatggtttaagaacctcttactgagtgttctttaattgtacgaatttaaaaatcaccaata |
46502412 |
T |
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| Q |
119 |
caaaagatgattctccttactgttacctc |
147 |
Q |
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| T |
46502411 |
caaaagatgattctccttactgttacctc |
46502383 |
T |
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Back To:
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Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 242 - 297
Target Start/End: Complemental strand, 46502292 - 46502237
Alignment:
| Q |
242 |
aaatgagattcatattctcctacaatttcaaatcaaaacctcattaatggttaata |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46502292 |
aaatgagattcatattctcctacaatttcaaatcaaaacctcattaatggttaata |
46502237 |
T |
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