View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16853_low_17 (Length: 344)
Name: NF16853_low_17
Description: NF16853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16853_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 7 - 332
Target Start/End: Complemental strand, 52771477 - 52771152
Alignment:
| Q |
7 |
aacaagacagacagaaaaatatgaatgtcaaatttaaagatgtttttaaatctaaagaaatcagactagcattcatggttggagcaggattgatggtgtt |
106 |
Q |
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| T |
52771477 |
aacaagacagacagaaaaatatgaatgtcaaatttaaagatgtttttaaatctaaagaaatcagactagcattcatggttggagcaggattgatggtgtt |
52771378 |
T |
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| Q |
107 |
ccaacagtttactggcattaacacagtgatgtactacagtccaaccattgttcaaatggctggatttcaatctaaagagttggctcttcaaatctcactc |
206 |
Q |
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| T |
52771377 |
ccaacagtttactggcattaacacagtgatgtactacagtccaaccattgttcaaatggctggatttcaatctaaagagttggctcttcaaatctcactc |
52771278 |
T |
|
| Q |
207 |
tttgttgctgcaatgaatgctgtcggaactgttcttggtatttacctcattgatcatgcagggaggaagatattagctctttgtagcttaggaggagtgt |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52771277 |
tttgttgctgcaatgaatgctgtcggaactgttcttggtatttacctcattgatcatgcagggaggaagatattagctctttgtagcttaggaggagtgt |
52771178 |
T |
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| Q |
307 |
ttacatctttggttctcttgtctgtg |
332 |
Q |
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|||||||||||||||||||||||||| |
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| T |
52771177 |
ttacatctttggttctcttgtctgtg |
52771152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 126 - 304
Target Start/End: Complemental strand, 52767403 - 52767225
Alignment:
| Q |
126 |
aacacagtgatgtactacagtccaaccattgttcaaatggctggatttcaatctaaagagttggctcttcaaatctcactctttgttgctgcaatgaatg |
225 |
Q |
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| T |
52767403 |
aacacagtgatgtactacagtccaacaattgtccaaatggctggctttcactctaatgagttggctcttcaactctctctcatagttgctggcttgaatg |
52767304 |
T |
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| Q |
226 |
ctgtcggaactgttcttggtatttacctcattgatcatgcagggaggaagatattagctctttgtagcttaggaggagt |
304 |
Q |
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| T |
52767303 |
ctgccggaacagttcttggtatttaccttattgaccatgcaggacggaaaaaattagccctgtatagcttaggaggagt |
52767225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 111 - 259
Target Start/End: Original strand, 392439 - 392587
Alignment:
| Q |
111 |
cagtttactggcattaacacagtgatgtactacagtccaaccattgttcaaatggctggatttcaatctaaagagttggctcttcaaatctcactctttg |
210 |
Q |
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|||||||| || || ||||| |||||||||||||||||||||||||||||||||||||| || || | || |||||||||||| | || ||| | | |
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| T |
392439 |
cagtttacaggtataaacacggtgatgtactacagtccaaccattgttcaaatggctggcttccatgccaatcagttggctcttcttctgtccctcatag |
392538 |
T |
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| Q |
211 |
ttgctgcaatgaatgctgtcggaactgttcttggtatttacctcattga |
259 |
Q |
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|||||| ||||| ||||||||||| ||||||| |||||||| ||||| |
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| T |
392539 |
ttgctggcatgaacgctgtcggaacaattcttggcatttaccttattga |
392587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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