View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16853_low_19 (Length: 329)
Name: NF16853_low_19
Description: NF16853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16853_low_19 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 10 - 311
Target Start/End: Original strand, 18028548 - 18028849
Alignment:
| Q |
10 |
atgaaccacaatggagaaactctaccagaaaacaagagctcttcgtctagtccttgcgaagataaactcgatagaaaccacaaaccagtaaaacaaagaa |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18028548 |
atgaaccacaatggagaaactctaccagaaaacaagagctcttcgtctagtccttgcgaagataaactcgatagaaaccacaaaccagtaaaacaaagaa |
18028647 |
T |
|
| Q |
110 |
cccacctatatcgcacctgagagaatccgctacaatggagagtgacaaacccaaaagatgcaataactgaagctgctaagtgaacaaaccgaccttgagc |
209 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18028648 |
cccacctatatcgcacctcagagaatccgctacaatggagagtgacaaacccaaaagatgcaataactgaagctgctaagtgaacaaaccgaccttgagc |
18028747 |
T |
|
| Q |
210 |
tcgtcggaaaaccaaccctgatctcgccggaaagataacaccttcgccggaagagagataagccagttgagaacaaagaaaacagcccggagatgcacga |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18028748 |
tcgtcggaaaaccaaccctgatctcgccggaaagataacaccttcgccggaagagagataagccagttgagaacaaagaaaacagcccggagatgcacga |
18028847 |
T |
|
| Q |
310 |
ac |
311 |
Q |
| |
|
|| |
|
|
| T |
18028848 |
ac |
18028849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University