View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16853_low_2 (Length: 583)
Name: NF16853_low_2
Description: NF16853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16853_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 522; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 15 - 568
Target Start/End: Complemental strand, 32246573 - 32246021
Alignment:
| Q |
15 |
aatatatatagaattcaaattaaattattgagttgaatagtatttttgacattctataggcatgcattttgattagatcattttccaatttccatgaata |
114 |
Q |
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| T |
32246573 |
aatatatatagaattcaaatttaattattcagttgaatagtatttttgacattctataagcatgcattttgattagatcattttccaatttccatgaata |
32246474 |
T |
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| Q |
115 |
ccttttcttgtagaatccttatctctagttgcattttttgttgtccctatagtcagaatcagaagcatatatgatatatacatccctttttactattctt |
214 |
Q |
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| T |
32246473 |
ccttttcttgtagaatccttatctctagttgcattttttgttgtccctatagtcagaatcagaagcatatatgatatatacatccctttttactattctt |
32246374 |
T |
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| Q |
215 |
tgatgtatataggaagcgttcactagcaaaattgcatccaaaatggaccatccttttatttttccttttaatagcatagaaaaataatgggtggacattg |
314 |
Q |
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| T |
32246373 |
tgatgtatataggaagcgttcactggcaaaattgcatccaaaatggaccatccttttatttttccttt-aatagcatagaaaaataatgggtggacattg |
32246275 |
T |
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| Q |
315 |
tgctttaagtgatgaaatccactatttttaaaatttaaagggagactttatttcagaacattgggtcctgattaattgcgtacagcactacaatcattag |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
32246274 |
tgctttaagtgatgaaatccactatttttaaaatttaaagggagactttatttcagaacattgggtcctgattaattgcgtacagcactaaaatcattag |
32246175 |
T |
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| Q |
415 |
aggatgaaacaaaattggttttatattaacacgtgaatgaaaggaaaataaatttgaaatgaatatatgaattttgaagcatacagatataattatttat |
514 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32246174 |
aggacgaaacaaaattggttttatattaacacgtgaatgaaaggaaaataaatttgaaatgaatatatgaattttgaagcatacagatataattatttat |
32246075 |
T |
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| Q |
515 |
catagtgatcacgctgtaatattggttctcatattagtatctgcatagatattt |
568 |
Q |
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| T |
32246074 |
catagtgatcacgctgtaatattggttctcatattagtatctgcatagatattt |
32246021 |
T |
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