View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16853_low_21 (Length: 313)
Name: NF16853_low_21
Description: NF16853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16853_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 18 - 289
Target Start/End: Complemental strand, 50441484 - 50441212
Alignment:
| Q |
18 |
ataagggtgtctaataaacaattttaaaaaa-tggatttctttgggttgcagattaattggaccctggtaatgcaattaccaaaatattaggcccaaaac |
116 |
Q |
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| T |
50441484 |
ataagggtgtctaataaacaattttaaaaaaatggatttctttgggttgcagattaattggaccctggtaatgcaattaccaaaatattaggcccagaac |
50441385 |
T |
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| Q |
117 |
aataaataatacagtttttattcgaaaattgcttttctccctttcaaaattactttttcctttaaaaatattcaatgtgagttaattcacgtcgaatatt |
216 |
Q |
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| T |
50441384 |
aataaataatacagtttttatttgaaaattgcttttctccctttcaaaattactttttcctttaaaaatgttcaatgtgagttaattcacgctgaatatt |
50441285 |
T |
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| Q |
217 |
tttaaacgtgaattaactcacgtaggcataaaagcaaaacaggaatgagcaaaactgaaaggaagaagagcaa |
289 |
Q |
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| T |
50441284 |
tttcaaggtgaattaactcacgtaggcataaaagcaaaacgggaatgagcaaaactgaaaggaagaagagcaa |
50441212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 140 - 181
Target Start/End: Original strand, 32191060 - 32191101
Alignment:
| Q |
140 |
gaaaattgcttttctccctttcaaaattactttttcctttaa |
181 |
Q |
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| T |
32191060 |
gaaaattgcttttctccctttcaaaattacttattcccttaa |
32191101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 270
Target Start/End: Complemental strand, 16698497 - 16698369
Alignment:
| Q |
142 |
aaattgcttttctccctttcaaaattactttttcctttaaaaatattcaatgtgagttaattcacgtcgaatatttttaaacgtgaattaactcacgtag |
241 |
Q |
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| T |
16698497 |
aaattgctcttctcccttttaaaattgctcattcccttaaaaatgttcagcatgagttaactcacgctagacattttacaacgtgtgttaactcacgtag |
16698398 |
T |
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| Q |
242 |
gcataaaagcaaaacaggaatgagcaaaa |
270 |
Q |
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| T |
16698397 |
gcacaaaaggaagaggggaatgagcaaaa |
16698369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 270
Target Start/End: Complemental strand, 17672733 - 17672605
Alignment:
| Q |
142 |
aaattgcttttctccctttcaaaattactttttcctttaaaaatattcaatgtgagttaattcacgtcgaatatttttaaacgtgaattaactcacgtag |
241 |
Q |
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| T |
17672733 |
aaattgctcttctcccttttaaaattgctcattcccttaaaaatgttcagcatgagttaactcacgctagacattttacaacgtgtgttaactcacgtag |
17672634 |
T |
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| Q |
242 |
gcataaaagcaaaacaggaatgagcaaaa |
270 |
Q |
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| T |
17672633 |
gcacaaaaggaagaggggaatgagcaaaa |
17672605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 289
Target Start/End: Original strand, 47533068 - 47533128
Alignment:
| Q |
229 |
ttaactcacgtaggcataaaagcaaaacaggaatgagcaaaactgaaaggaagaagagcaa |
289 |
Q |
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|||||||||||| ||| |||||||||| ||||||||| |||| |||| ||||||||||| |
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| T |
47533068 |
ttaactcacgtatgcacaaaagcaaaagaggaatgaggaaaaacaaaagaaagaagagcaa |
47533128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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