View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16853_low_22 (Length: 312)
Name: NF16853_low_22
Description: NF16853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16853_low_22 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 14 - 257
Target Start/End: Complemental strand, 37838659 - 37838416
Alignment:
| Q |
14 |
caaaggtttgagaaggaaactgcatatttgtgtgagtgcaaaaatgataaccaattgtaactcaaacaaggtcaaaaaagatttcattggtctcctttca |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37838659 |
caaaggtttgagaaggaaactgcatatttgtgtgagtgcaaaaatgataaccaattgtaactcaaacaaggtcaaaaaagatttcattggtctcctttca |
37838560 |
T |
|
| Q |
114 |
ttttcgtgactactccataaaccatctgaaacaatatggggtggagcctcaaaacaaattttgtatacagtttcattcaatcttttaatttcgtagaaca |
213 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37838559 |
ttttcgtgaccactccataaaccatctgaaacaatatggggtggagcctcaaaacaaattttgtatacagtttcattcaatcttttaatttcgtagaaca |
37838460 |
T |
|
| Q |
214 |
aagtatcatttgaatttatgctcatttttgtatgacttaatcca |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37838459 |
aagtatcatttgaatttatgctcatttttgtatgacttaatcca |
37838416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 14 - 257
Target Start/End: Complemental strand, 37844222 - 37843979
Alignment:
| Q |
14 |
caaaggtttgagaaggaaactgcatatttgtgtgagtgcaaaaatgataaccaattgtaactcaaacaaggtcaaaaaagatttcattggtctcctttca |
113 |
Q |
| |
|
||||| ||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |
|
|
| T |
37844222 |
caaagatttgagaagaaaacgacatatttgcgtgagtgcaaaaatgataaccaattgtaactcaaacaaggtcaagaaagatttcattggtctccttcca |
37844123 |
T |
|
| Q |
114 |
ttttcgtgactactccataaaccatctgaaacaatatggggtggagcctcaaaacaaattttgtatacagtttcattcaatcttttaatttcgtagaaca |
213 |
Q |
| |
|
||||| || | || |||||||||||||||||||||||||||||||||||| ||| |||||||||| | | ||||||||||||||||||||||||||||| |
|
|
| T |
37844122 |
ttttcatggccaccccataaaccatctgaaacaatatggggtggagcctctaaataaattttgtaacctgcttcattcaatcttttaatttcgtagaaca |
37844023 |
T |
|
| Q |
214 |
aagtatcatttgaatttatgctcatttttgtatgacttaatcca |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
37844022 |
aagtatcatttgaatttatgctcatttttgtatgacttattcca |
37843979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 160; Significance: 3e-85; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 18 - 257
Target Start/End: Original strand, 38392564 - 38392803
Alignment:
| Q |
18 |
ggtttgagaaggaaactgcatatttgtgtgagtgcaaaaatgataaccaattgtaactcaaacaaggtcaaaaaagatttcattggtctcctttcatttt |
117 |
Q |
| |
|
||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||| |||||| |
|
|
| T |
38392564 |
ggtttgagaagaaaactacatatttgagtgagtgcaaaaatgataaccaattgtaactcaaacaagatcaagaaggatttcattggtctccttccatttt |
38392663 |
T |
|
| Q |
118 |
cgtgactactccataaaccatctgaaacaatatggggtggagcctcaaaacaaattttgtatacagtttcattcaatcttttaatttcgtagaacaaagt |
217 |
Q |
| |
|
||| | || ||||||||||||||||||||||||||||||||||||| |||||| ||||||| | | ||||||||||||||||||||| ||||||||| |
|
|
| T |
38392664 |
cgtagccaccccataaaccatctgaaacaatatggggtggagcctcagaacaaacattgtatattggtccattcaatcttttaatttcgttgaacaaagt |
38392763 |
T |
|
| Q |
218 |
atcatttgaatttatgctcatttttgtatgacttaatcca |
257 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38392764 |
ataatttgaatttatgctcatttttgtatgacttaatcca |
38392803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 14 - 257
Target Start/End: Original strand, 38383703 - 38383945
Alignment:
| Q |
14 |
caaaggtttgagaaggaaactgcatatttgtgtgagtgcaaaaatgataaccaattgtaactcaaacaaggtcaaaaaagatttcattggtctcctttca |
113 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||||||||||||||| ||| |||||||||||||| || || || |||||||||||||||||| || |
|
|
| T |
38383703 |
caaaggtttgagaaggaaactacatatttgagtgagtgcaaaaatgataatcaactgtaactcaaacaatgttaagaaggatttcattggtctccttcca |
38383802 |
T |
|
| Q |
114 |
ttttcgtgactactccataaaccatctgaaacaatatggggtggagcctcaaaacaaattttgtatacagtttcattcaatcttttaatttcgtagaaca |
213 |
Q |
| |
|
|| ||||| | || |||||||||||||||||||||||||||||||||||||||||||| |||||||| | | ||||||||||||||||||||| ||||| |
|
|
| T |
38383803 |
ttatcgtggccaccccataaaccatctgaaacaatatggggtggagcctcaaaacaaactttgtatattggtccattcaatcttttaatttcgttgaaca |
38383902 |
T |
|
| Q |
214 |
aagtatcatttgaatttatgctcatttttgtatgacttaatcca |
257 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
38383903 |
aagtataatttgaatttatgctca-ttttgtatgacttaatcca |
38383945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 14 - 254
Target Start/End: Original strand, 38401136 - 38401376
Alignment:
| Q |
14 |
caaaggtttgagaaggaaactgcatatttgtgtgagtgcaaaaatgataaccaattgtaactcaaacaaggtcaaaaaagatttcattggtctcctttca |
113 |
Q |
| |
|
||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||| || || || ||||||||||| || || || |
|
|
| T |
38401136 |
caaaggtttgagaagaaaactacatatttgagtgagtgcaaaaatgataaccaattgtaactcaaacatgggaaagaagaatttcattggtgtctttcca |
38401235 |
T |
|
| Q |
114 |
ttttcgtgactactccataaaccatctgaaacaatatggggtggagcctcaaaacaaattttgtatacagtttcattcaatcttttaatttcgtagaaca |
213 |
Q |
| |
|
|||||||| | | |||||||||||||||||||||| | ||||||||||||| ||||| ||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
38401236 |
ttttcgtggccagcccataaaccatctgaaacaataggaggtggagcctcaatacaaacattgtatattgtttcattcaatcttttaatttggtagaaca |
38401335 |
T |
|
| Q |
214 |
aagtatcatttgaatttatgctcatttttgtatgacttaat |
254 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
38401336 |
aagtatcatttgaatttatgctcattttcgtatgacttaat |
38401376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University