View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16853_low_23 (Length: 310)
Name: NF16853_low_23
Description: NF16853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16853_low_23 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 13 - 290
Target Start/End: Complemental strand, 29643810 - 29643533
Alignment:
| Q |
13 |
aatattaaacatatagcaatcttacgttggaaaagaaacaagacaaacacagattgatatatttgtaggcctataatggttttgatttacatcactaaga |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29643810 |
aatattaaacatatagcaatcttacgttggaaaagaaacaagacaaacacagattgatatatttgtaggcctataatggttttgatttacatcactaaga |
29643711 |
T |
|
| Q |
113 |
tcagagtgactcagttcattctcattaacttcaaaaattgcagaagctgttaagacttaagatattaaatgagagcatatttacttttcacattatacag |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29643710 |
tcagagtgactcagttcattctcattaacttcaaaaattgcagaagctgttaagacttaagatattaaatgagagcatatttacttttcacattatacag |
29643611 |
T |
|
| Q |
213 |
tgttttaacaacttgagaagggaaatgtttcaatagaaatctttagaagtagaagccatgttatattctcttgatgct |
290 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29643610 |
tgttttaacaacttgagaagggaaatttttcaatagaaatctttagaagtagaagccatgttatattctcttgatgct |
29643533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 169 - 290
Target Start/End: Complemental strand, 29648873 - 29648752
Alignment:
| Q |
169 |
ttaagatattaaatgagagcatatttacttttcacattatacagtgttttaacaacttgagaagggaaatgtttcaatagaaatctttagaagtagaagc |
268 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
29648873 |
ttaagatattaaatgagagcatatgtacttttcacattatacagtgttttaacaacttgagaaggcaaatgtttcaatagaaatctttagaagtagaagc |
29648774 |
T |
|
| Q |
269 |
catgttatattctcttgatgct |
290 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
29648773 |
catgttatattctcttgatgct |
29648752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 13 - 117
Target Start/End: Complemental strand, 29649764 - 29649660
Alignment:
| Q |
13 |
aatattaaacatatagcaatcttacgttggaaaagaaacaagacaaacacagattgatatatttgtaggcctataatggttttgatttacatcactaaga |
112 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
29649764 |
aatattaaacatatagcaatcttatattgaaaaagaaacaagacaaacacagtttaatatatttgtatgcctataatggttttgatttacatcactaaga |
29649665 |
T |
|
| Q |
113 |
tcaga |
117 |
Q |
| |
|
||||| |
|
|
| T |
29649664 |
tcaga |
29649660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 289
Target Start/End: Complemental strand, 19820270 - 19820230
Alignment:
| Q |
249 |
aaatctttagaagtagaagccatgttatattctcttgatgc |
289 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
19820270 |
aaatctttacaagtagaagccatgatatattctcttgatgc |
19820230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University