View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16853_low_24 (Length: 297)

Name: NF16853_low_24
Description: NF16853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16853_low_24
NF16853_low_24
[»] chr7 (9 HSPs)
chr7 (14-281)||(45406598-45406863)
chr7 (15-176)||(42080786-42080948)
chr7 (122-205)||(38788970-38789051)
chr7 (109-175)||(17474750-17474816)
chr7 (109-175)||(17510234-17510300)
chr7 (109-175)||(17542914-17542980)
chr7 (109-175)||(17578398-17578464)
chr7 (75-173)||(43989689-43989786)
chr7 (77-173)||(29912589-29912683)
[»] chr3 (5 HSPs)
chr3 (14-176)||(431972-432136)
chr3 (38-176)||(20934942-20935079)
chr3 (76-174)||(32970441-32970539)
chr3 (93-194)||(50331958-50332057)
chr3 (77-174)||(19817384-19817479)
[»] scaffold0053 (1 HSPs)
scaffold0053 (15-176)||(31033-31195)
[»] chr8 (12 HSPs)
chr8 (20-167)||(18953276-18953425)
chr8 (124-205)||(30254498-30254577)
chr8 (104-193)||(13756525-13756612)
chr8 (103-199)||(10901452-10901546)
chr8 (63-175)||(14373888-14373998)
chr8 (77-174)||(16313228-16313323)
chr8 (77-174)||(34800828-34800923)
chr8 (93-194)||(42797285-42797384)
chr8 (102-194)||(23141804-23141894)
chr8 (122-174)||(23394814-23394864)
chr8 (33-162)||(38291782-38291911)
chr8 (109-173)||(21587045-21587109)
[»] chr2 (9 HSPs)
chr2 (16-176)||(6466154-6466312)
chr2 (41-168)||(36720078-36720205)
chr2 (41-202)||(3395400-3395559)
chr2 (102-167)||(36727642-36727707)
chr2 (140-202)||(5788918-5788978)
chr2 (81-168)||(29651783-29651870)
chr2 (138-176)||(19040701-19040739)
chr2 (102-171)||(25546947-25547016)
chr2 (138-174)||(39839132-39839168)
[»] chr4 (8 HSPs)
chr4 (14-205)||(42757500-42757688)
chr4 (93-191)||(13228683-13228779)
chr4 (102-176)||(50158192-50158266)
chr4 (113-173)||(42727943-42728003)
chr4 (122-199)||(28475662-28475737)
chr4 (77-174)||(55050042-55050137)
chr4 (109-173)||(39976666-39976730)
chr4 (122-201)||(42756850-42756927)
[»] scaffold1315 (1 HSPs)
scaffold1315 (14-173)||(517-679)
[»] scaffold1293 (1 HSPs)
scaffold1293 (14-173)||(1392-1554)
[»] chr1 (7 HSPs)
chr1 (102-202)||(43387108-43387206)
chr1 (95-194)||(22636320-22636417)
chr1 (138-176)||(1992426-1992464)
chr1 (77-174)||(17006472-17006567)
chr1 (138-176)||(20306777-20306815)
chr1 (77-174)||(34159524-34159619)
chr1 (138-176)||(40946523-40946561)
[»] chr6 (4 HSPs)
chr6 (77-166)||(31737199-31737288)
chr6 (93-194)||(1599670-1599769)
chr6 (138-176)||(7428529-7428567)
chr6 (77-174)||(23410068-23410163)
[»] chr5 (3 HSPs)
chr5 (39-198)||(9012660-9012817)
chr5 (38-176)||(38015877-38016015)
chr5 (77-174)||(4062156-4062251)
[»] scaffold0159 (1 HSPs)
scaffold0159 (140-202)||(33291-33351)
[»] scaffold0012 (1 HSPs)
scaffold0012 (77-174)||(31003-31098)


Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 14 - 281
Target Start/End: Complemental strand, 45406863 - 45406598
Alignment:
Q  14 atattagtcaaagagcaacaacatgtgagatcgacatcacttcttcaaccaaagtcctaaagcattaggtatatggataatctccctcatatgtttctca 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45406863 atattagtcaaagagcaacaacatgtgagatcgacatcacttcttcaaccaaagtcctaaagcattaggtatatggataatctccctcatatgtttctca 45406764  T
Q  114 acatctcatcttgcatcaaatgtcaaattttaactcacaattgacacattaacatttctccatattaagtatgagactctccgtgtctgtgaacaagatc 213  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||    
T  45406763 acatctcctcttacatcaaatgtcaaattttaactcacaattgacacattaacatttctcc--attaagtatgagactctccgtatctgtgaacaagatc 45406666  T
Q  214 attggctcaacactccaataacgagtatttaacaaagggagtgttaaaatatcaaaaacatatatatt 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45406665 attggctcaacactccaataacgagtatttaacaaagggagtgttaaaatatcaaaaacatatatatt 45406598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 15 - 176
Target Start/End: Original strand, 42080786 - 42080948
Alignment:
Q  15 tattagtcaaagagcaacaacat--gtgagatcgacatcacttcttcaaccaaagtcctaaagcattaggtatatggataatctccctcatatgtttctc 112  Q
    ||||||| ||||||||||||||   ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  42080786 tattagttaaagagcaacaacacaagtgagatcgacatcacttcttcacccaaagtcctaaagcattaggtatatggataatct-cctcatatgtttctc 42080884  T
Q  113 aacatctcatcttgcatcaaatgtcaaattttaactcacaattgacacattaacatttctccat 176  Q
    |||||||  ||||||||| |||||||||||||||||||| | ||||||||||| || |||||||    
T  42080885 aacatctactcttgcatctaatgtcaaattttaactcacgactgacacattaatatctctccat 42080948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 205
Target Start/End: Original strand, 38788970 - 38789051
Alignment:
Q  122 tcttgcatcaaatgtcaaattttaactcacaattgacacattaacatttctccatattaagtatgagactctccgtgtctgtga 205  Q
    ||||||||  ||||| ||||||||||| ||| || |||||||||||| |||||  ||||||| | ||||||||||||| |||||    
T  38788970 tcttgcatacaatgtgaaattttaacttacacttaacacattaacatctctcc--attaagtgtcagactctccgtgtttgtga 38789051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 175
Target Start/End: Original strand, 17474750 - 17474816
Alignment:
Q  109 tctcaacatctcatcttgcatcaaatgtcaaattttaactcacaattgacacattaacatttctcca 175  Q
    |||||||||||  |||| ||| |||||| ||| ||||||||| | ||||||||||||||| ||||||    
T  17474750 tctcaacatctactcttacataaaatgtgaaactttaactcaaatttgacacattaacatctctcca 17474816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 175
Target Start/End: Original strand, 17510234 - 17510300
Alignment:
Q  109 tctcaacatctcatcttgcatcaaatgtcaaattttaactcacaattgacacattaacatttctcca 175  Q
    |||||||||||  |||| ||| |||||| ||| ||||||||| | ||||||||||||||| ||||||    
T  17510234 tctcaacatctactcttacataaaatgtgaaactttaactcaaatttgacacattaacatctctcca 17510300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 175
Target Start/End: Complemental strand, 17542980 - 17542914
Alignment:
Q  109 tctcaacatctcatcttgcatcaaatgtcaaattttaactcacaattgacacattaacatttctcca 175  Q
    |||||||||||  |||| ||| |||||| ||| ||||||||| | ||||||||||||||| ||||||    
T  17542980 tctcaacatctactcttacataaaatgtgaaactttaactcaaatttgacacattaacatctctcca 17542914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 175
Target Start/End: Complemental strand, 17578464 - 17578398
Alignment:
Q  109 tctcaacatctcatcttgcatcaaatgtcaaattttaactcacaattgacacattaacatttctcca 175  Q
    |||||||||||  |||| ||| |||||| ||| ||||||||| | ||||||||||||||| ||||||    
T  17578464 tctcaacatctactcttacataaaatgtgaaactttaactcaaatttgacacattaacatctctcca 17578398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 173
Target Start/End: Complemental strand, 43989786 - 43989689
Alignment:
Q  75 gcattaggtatatggataatctccctcatatgtttctcaacatctcatcttgcatcaaatgtcaaattttaactcacaattgacacattaacatttctc 173  Q
    |||||| ||||||| || ||||| || | |||||||||| |||||  | ||||||  ||| | ||||||||||||||| ||||||||||||||| ||||    
T  43989786 gcattatgtatatgaatcatctcacttaaatgtttctca-catctactattgcatacaatataaaattttaactcacacttgacacattaacatctctc 43989689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 173
Target Start/End: Complemental strand, 29912683 - 29912589
Alignment:
Q  77 attaggtatatggataatctccctcatatgtttctcaacatctcatcttgcatcaaatgtcaaattttaactcacaattgacacattaacatttctc 173  Q
    ||||||||||||||| ||  | || ||||||| ||||||||||  |||| |||| ||||| |   ||||||||||| ||||| ||||||||||||||    
T  29912683 attaggtatatggatcataacacttatatgttactcaacatctactcttacatccaatgtgac--tttaactcacacttgacgcattaacatttctc 29912589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 110; Significance: 2e-55; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 14 - 176
Target Start/End: Complemental strand, 432136 - 431972
Alignment:
Q  14 atattagtcaaagagcaacaacat--gtgagatcgacatcacttcttcaaccaaagtcctaaagcattaggtatatggataatctccctcatatgtttct 111  Q
    |||||||||||||||||||||||   ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  432136 atattagtcaaagagcaacaacacaagtgagatcgacatcacttcttcacccaaagtcctaaagcattagttatatggataatcttcctcatatgtttct 432037  T
Q  112 caacatctcatcttgcatcaaatgtcaaattttaactcacaattgacacattaacatttctccat 176  Q
    |||||| |  ||||||||| |||||| ||||||||||||||||||||||||||| || |||||||    
T  432036 caacatatactcttgcatccaatgtcgaattttaactcacaattgacacattaatatctctccat 431972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 176
Target Start/End: Original strand, 20934942 - 20935079
Alignment:
Q  38 gtgagatcgacatcacttcttcaaccaaagtcctaaagcattaggtatatggataatctccctcatatgtttctcaacatctcatcttgcatcaaatgtc 137  Q
    |||||||  ||||||| |||||   |||||||| ||||||||| |||||||  | ||||| || | |||||||||| |||||  | ||||||  ||| |     
T  20934942 gtgagattcacatcacatcttctttcaaagtccgaaagcattatgtatatgagtcatctcacttaaatgtttctca-catctactattgcatacaatata 20935040  T
Q  138 aaattttaactcacaattgacacattaacatttctccat 176  Q
    |||||||||||||||  |||||||||||||| |||||||    
T  20935041 aaattttaactcacacctgacacattaacatctctccat 20935079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 174
Target Start/End: Original strand, 32970441 - 32970539
Alignment:
Q  76 cattaggtatatggataatctccctcatatgtttctcaacatctcatcttgcatcaaatgtcaaattttaactcacaattgacacattaacatttctcc 174  Q
    |||||||||||||| | ||||| || |||| ||| ||| |||||  ||||||||| ||||| ||| ||| ||||||| |||||| |||||||| |||||    
T  32970441 cattaggtatatgggtcatctcacttatatatttttcagcatctactcttgcatctaatgtgaaactttcactcacatttgacatattaacatatctcc 32970539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 194
Target Start/End: Original strand, 50331958 - 50332057
Alignment:
Q  93 atctccctcatatgtttctcaacatctcatcttgcatcaaatgtcaaattttaactcacaattgacacattaacatttctccatattaagtatgagactc 192  Q
    ||||| || ||||||||||||||||||  | ||||||  |||||   ||||||||||||| ||||||||||||||| ||||  ||||||| |||| ||||    
T  50331958 atctcacttatatgtttctcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctctc--tattaagcatgaaactc 50332055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 174
Target Start/End: Original strand, 19817384 - 19817479
Alignment:
Q  77 attaggtatatggataatctccctcatatgtttctcaacatctcatcttgcatcaaatgtcaaattttaactcacaattgacacattaacatttctcc 174  Q
    ||||||||||||||| ||  | || ||||||| ||||||||||  |||| |||| ||||| |   |||||||| || |||||||||||||||||||||    
T  19817384 attaggtatatggatcataacacttatatgttactcaacatctactcttacatccaatgtgac--tttaactcgcacttgacacattaacatttctcc 19817479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 15 - 176
Target Start/End: Complemental strand, 31195 - 31033
Alignment:
Q  15 tattagtcaaagagcaacaacat--gtgagatcgacatcacttcttcaaccaaagtcctaaagcattaggtatatggataatctccctcatatgtttctc 112  Q
    ||||||| ||||||||||||||   ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  31195 tattagttaaagagcaacaacacaagtgagatcgacatcacttcttcacccaaagtcctaaagcattaggtatatggataatct-cctcatatgtttctc 31097  T
Q  113 aacatctcatcttgcatcaaatgtcaaattttaactcacaattgacacattaacatttctccat 176  Q
    |||||||  ||||||||| |||||||||||||||||||| | ||||| ||||| || |||||||    
T  31096 aacatctactcttgcatctaatgtcaaattttaactcacgactgacaaattaatatctctccat 31033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 20 - 167
Target Start/End: Original strand, 18953276 - 18953425
Alignment:
Q  20 gtcaaagagcaacaa--catgtgagatcgacatcacttcttcaaccaaagtcctaaagcattaggtatatggataatctccctcatatgtttctcaacat 117  Q
    |||||||||||||||  || |||||||||| |||||||||||| ||||||||||||||||||| || | || ||||||||||||| |||||| |||||||    
T  18953276 gtcaaagagcaacaatacaagtgagatcgatatcacttcttcacccaaagtcctaaagcattaagtttttgaataatctccctcaaatgtttttcaacat 18953375  T
Q  118 ctcatcttgcatcaaatgtcaaattttaactcacaattgacacattaaca 167  Q
    ||  ||||||||| ||||||||||||||| ||||| ||||||||||||||    
T  18953376 ctactcttgcatccaatgtcaaattttaattcacagttgacacattaaca 18953425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 124 - 205
Target Start/End: Complemental strand, 30254577 - 30254498
Alignment:
Q  124 ttgcatcaaatgtcaaattttaactcacaattgacacattaacatttctccatattaagtatgagactctccgtgtctgtga 205  Q
    ||||||| | |||| |||||||||||||| ||||||||||||||| | |||   ||||||||||||||||||||||| ||||    
T  30254577 ttgcatctattgtcgaattttaactcacatttgacacattaacatctttcc--gttaagtatgagactctccgtgtccgtga 30254498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 193
Target Start/End: Complemental strand, 13756612 - 13756525
Alignment:
Q  104 atgtttctcaacatctcatcttgcatcaaatgtcaaattttaactcacaattgacacattaacatttctccatattaagtatgagactct 193  Q
    ||||||||||||||||  | ||||||  |||||   ||||||||||||| ||||||||||||||| |||  |||||||| ||||||||||    
T  13756612 atgtttctcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatatct--atattaagcatgagactct 13756525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 103 - 199
Target Start/End: Original strand, 10901452 - 10901546
Alignment:
Q  103 tatgtttctcaacatctcatcttgcatcaaatgtcaaattttaactcacaattgacacattaacatttctccatattaagtatgagactctccgtgt 199  Q
    |||||| ||||||||||  | ||||||  |||||   ||||||||||||| |||| |||||||||| |||||  |||||||| ||||||||||||||    
T  10901452 tatgttactcaacatctactattgcattcaatgtgttattttaactcacatttgatacattaacatctctcc--attaagtacgagactctccgtgt 10901546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 175
Target Start/End: Complemental strand, 14373998 - 14373888
Alignment:
Q  63 caaagtcctaaagcattaggtatatggataatctccctcatatgtttctcaacatctcatcttgcatcaaatgtcaaattttaactcacaattgacacat 162  Q
    ||||||| |||| |||||||||||||| | ||||| || | ||  | ||||||||||| ||||  ||| ||| | ||||||||||||||  |||||||||    
T  14373998 caaagtcttaaaacattaggtatatgggtcatctcacttacatagtgctcaacatctcctcttatatccaatttaaaattttaactcac--ttgacacat 14373901  T
Q  163 taacatttctcca 175  Q
    ||||||| |||||    
T  14373900 taacattactcca 14373888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 174
Target Start/End: Original strand, 16313228 - 16313323
Alignment:
Q  77 attaggtatatggataatctccctcatatgtttctcaacatctcatcttgcatcaaatgtcaaattttaactcacaattgacacattaacatttctcc 174  Q
    ||||||||||||||| ||  | || ||||||| ||||||||||  |||| |||| ||||| |   |||||||| || |||||||||||||||||||||    
T  16313228 attaggtatatggatcataacacttatatgttactcaacatctactcttacatccaatgtgac--tttaactcgcacttgacacattaacatttctcc 16313323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 174
Target Start/End: Complemental strand, 34800923 - 34800828
Alignment:
Q  77 attaggtatatggataatctccctcatatgtttctcaacatctcatcttgcatcaaatgtcaaattttaactcacaattgacacattaacatttctcc 174  Q
    ||||||||||||||| ||  | || ||||||| ||||||||||  |||| |||| ||||| |   |||||||| || |||||||||||||||||||||    
T  34800923 attaggtatatggatcataacacttatatgttactcaacatctactcttacatccaatgtgac--tttaactcgcacttgacacattaacatttctcc 34800828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 194
Target Start/End: Original strand, 42797285 - 42797384
Alignment:
Q  93 atctccctcatatgtttctcaacatctcatcttgcatcaaatgtcaaattttaactcacaattgacacattaacatttctccatattaagtatgagactc 192  Q
    ||||| || |||||||||||||||| |  | ||||||  |||||   ||||||||||||| ||||||||||||||| | ||  ||||||| |||||||||    
T  42797285 atctcacttatatgtttctcaacatatactattgcattcaatgtgttattttaactcacacttgacacattaacatctttc--tattaagcatgagactc 42797382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 194
Target Start/End: Original strand, 23141804 - 23141894
Alignment:
Q  102 atatgtttctcaacatctcatcttgcatcaaatgtcaaattttaactcacaattgacacattaacatttctccatattaagtatgagactctc 194  Q
    ||||||||||||||||||  | ||||||  |||||   ||||||||||| | ||||||| ||||||| ||||  ||||||| |||||||||||    
T  23141804 atatgtttctcaacatctactattgcattcaatgtgttattttaactcatacttgacacgttaacatctctc--tattaagcatgagactctc 23141894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 174
Target Start/End: Original strand, 23394814 - 23394864
Alignment:
Q  122 tcttgcatcaaatgtcaaattttaactcacaattgacacattaacatttctcc 174  Q
    ||||||||| ||||| ||||||||||||||  ||||||||| |||||||||||    
T  23394814 tcttgcatccaatgtgaaattttaactcac--ttgacacatcaacatttctcc 23394864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 162
Target Start/End: Complemental strand, 38291911 - 38291782
Alignment:
Q  33 aacatgtgagatcgacatcacttcttcaaccaaagtcctaaagcattaggtatatggataatctccctcatatgtttctcaacatctcatcttgcatcaa 132  Q
    |||||||||||| ||||  || |||||| |||||  | |||  |||||||||||| |||||| || || |||||||||||||  ||   |||||||||||    
T  38291911 aacatgtgagattgacacgacatcttcatccaaaaccttaagacattaggtatattgataatttcacttatatgtttctcaatgtccactcttgcatcaa 38291812  T
Q  133 atgtcaaattttaactcacaattgacacat 162  Q
    ||||  || ||||| || |||||| |||||    
T  38291811 atgtggaactttaagtcgcaattgccacat 38291782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 173
Target Start/End: Original strand, 21587045 - 21587109
Alignment:
Q  109 tctcaacatctcatcttgcatcaaatgtcaaattttaactcacaattgacacattaacatttctc 173  Q
    |||||||||||  ||||||||| ||||| ||| ||||| | |||||||||||| |||||| ||||    
T  21587045 tctcaacatctactcttgcatctaatgtgaaaatttaaattacaattgacacaataacatatctc 21587109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 6e-37; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 16 - 176
Target Start/End: Complemental strand, 6466312 - 6466154
Alignment:
Q  16 attagtcaaagagcaacaacat--gtgagatcgacatcacttcttcaaccaaagtcctaaagcattaggtatatggataatctccctcatatgtttctca 113  Q
    |||||||||||||||||||||   ||||||||||||||||||||||| ||||| |||||||||||| |||||||| |||||||| |||| |||||| |||    
T  6466312 attagtcaaagagcaacaacacaagtgagatcgacatcacttcttcacccaaaatcctaaagcattgggtatatgaataatctctctcaaatgtttttca 6466213  T
Q  114 acatctcatcttgcatcaaatgtcaaattttaactcacaattgacacattaacatttctccat 176  Q
    |||| |  ||||||||| ||||||||||||||| |||||    |||| |||||||||||||||    
T  6466212 acatttactcttgcatccaatgtcaaattttaattcaca----acacgttaacatttctccat 6466154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 41 - 168
Target Start/End: Complemental strand, 36720205 - 36720078
Alignment:
Q  41 agatcgacatcacttcttcaaccaaagtcctaaagcattaggtatatggataatctccctcatatgtttctcaacatctcatcttgcatcaaatgtcaaa 140  Q
    |||| |||||||| |||||| |||||||| | |  |||||||||||||||| ||||| || ||||||| |||||||| |  | |||||   | |||  ||    
T  36720205 agattgacatcacatcttcacccaaagtcttcagacattaggtatatggatcatctcacttatatgttgctcaacatatattattgcacacattgtagaa 36720106  T
Q  141 ttttaactcacaattgacacattaacat 168  Q
    |||||||||||| |||||||||||||||    
T  36720105 ttttaactcacacttgacacattaacat 36720078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 41 - 202
Target Start/End: Original strand, 3395400 - 3395559
Alignment:
Q  41 agatcgacatcacttcttcaaccaaagtcctaaagcattaggtatatggataatctccctcatatgtttctcaacatctcatcttgcatcaaatgtcaaa 140  Q
    |||| ||||||||  ||||| ||||| || |||  |||||| ||||||  | ||||| || ||||||||||||||||||  | ||||||  || ||   |    
T  3395400 agattgacatcacaacttcacccaaaatcttaagacattagatatatgagtcatctcacttatatgtttctcaacatctactattgcattcaaagtgtta 3395499  T
Q  141 ttttaactcacaattgacacattaacatttctccatattaagtatgagactctccgtgtctg 202  Q
    ||||||||||||  |||||||||||||| |||||  |||||||||||||||||  |||||||    
T  3395500 ttttaactcacacctgacacattaacatctctcc--attaagtatgagactctttgtgtctg 3395559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 102 - 167
Target Start/End: Original strand, 36727642 - 36727707
Alignment:
Q  102 atatgtttctcaacatctcatcttgcatcaaatgtcaaattttaactcacaattgacacattaaca 167  Q
    |||||||||| |||||||  | ||||||| ||||| ||||||||| ||||||||||||||||||||    
T  36727642 atatgtttcttaacatctacttttgcatctaatgtgaaattttaagtcacaattgacacattaaca 36727707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 140 - 202
Target Start/End: Original strand, 5788918 - 5788978
Alignment:
Q  140 attttaactcacaattgacacattaacatttctccatattaagtatgagactctccgtgtctg 202  Q
    ||||||||||||| ||||||||||||||| ||| |  |||||||||||||||||| |||||||    
T  5788918 attttaactcacatttgacacattaacatctcttc--attaagtatgagactctctgtgtctg 5788978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 81 - 168
Target Start/End: Complemental strand, 29651870 - 29651783
Alignment:
Q  81 ggtatatggataatctccctcatatgtttctcaacatctcatcttgcatcaaatgtcaaattttaactcacaattgacacattaacat 168  Q
    ||||||||||| || || || | |||||  |||||||||  ||||||||  ||||| ||| ||||||||||| |||||||||||||||    
T  29651870 ggtatatggatcatatcacttagatgttgttcaacatctactcttgcattcaatgtgaaactttaactcacatttgacacattaacat 29651783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 176
Target Start/End: Complemental strand, 19040739 - 19040701
Alignment:
Q  138 aaattttaactcacaattgacacattaacatttctccat 176  Q
    ||||||||||||||| ||||||||||||||| |||||||    
T  19040739 aaattttaactcacacttgacacattaacatctctccat 19040701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 171
Target Start/End: Complemental strand, 25547016 - 25546947
Alignment:
Q  102 atatgtttctcaacatctcatcttgcatcaaatgtcaaattttaactcacaattgacacattaacatttc 171  Q
    |||||||| ||||||| |  ||||||||| |||||  || ||||||||||| ||||||||||| ||||||    
T  25547016 atatgtttttcaacatatgttcttgcatccaatgtagaactttaactcacatttgacacattaccatttc 25546947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 174
Target Start/End: Original strand, 39839132 - 39839168
Alignment:
Q  138 aaattttaactcacaattgacacattaacatttctcc 174  Q
    ||||||||||||||| ||||||||||||||| |||||    
T  39839132 aaattttaactcacacttgacacattaacatctctcc 39839168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 14 - 205
Target Start/End: Original strand, 42757500 - 42757688
Alignment:
Q  14 atattagtcaaagagcaacaacat--gtgagatcgacatcacttcttcaaccaaagtcctaaagcattaggtatatggataatctccctcatatgtttct 111  Q
    |||||||||||| ||||||||||   |||||||||||||||| | |||| ||||||||||||  |||||||||||| ||||||||||||||||||||| |    
T  42757500 atattagtcaaatagcaacaacacaagtgagatcgacatcaccttttcacccaaagtcctaagacattaggtatat-gataatctccctcatatgttttt 42757598  T
Q  112 caacatctcatcttgc--atcaaatgtcaaattttaactcacaattgacacattaacatttctccatattaagtatgagactctccgtgtctgtga 205  Q
    ||||||||  ||||||  ||| ||||| ||| ||| ||||||||||||||||||||||| ||||  ||||||    ||||||||||||||||||||    
T  42757599 caacatctactcttgcatatccaatgttaaacttttactcacaattgacacattaacatctctc--tattaa----gagactctccgtgtctgtga 42757688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 93 - 191
Target Start/End: Complemental strand, 13228779 - 13228683
Alignment:
Q  93 atctccctcatatgtttctcaacatctcatcttgcatcaaatgtcaaattttaactcacaattgacacattaacatttctccatattaagtatgagact 191  Q
    ||||| || ||||||||||||||||||  | ||||||  |||||   ||||||||||||| ||||||||||||||| |||||  |||||||||||||||    
T  13228779 atctcacttatatgtttctcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctctcc--attaagtatgagact 13228683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 176
Target Start/End: Complemental strand, 50158266 - 50158192
Alignment:
Q  102 atatgtttctcaacatctcatcttgcatcaaatgtcaaattttaactcacaattgacacattaacatttctccat 176  Q
    ||||||| |||||||| |  |||||||| |||||| ||| ||||||||| | ||||||||||||||| |||||||    
T  50158266 atatgttgctcaacatatactcttgcataaaatgtgaaactttaactcatacttgacacattaacatctctccat 50158192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 173
Target Start/End: Original strand, 42727943 - 42728003
Alignment:
Q  113 aacatctcatcttgcatcaaatgtcaaattttaactcacaattgacacattaacatttctc 173  Q
    |||||||  ||||||||||||||| ||| ||||| | ||||||||||||||||||| ||||    
T  42727943 aacatctactcttgcatcaaatgtaaaactttaagtaacaattgacacattaacatatctc 42728003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 199
Target Start/End: Original strand, 28475662 - 28475737
Alignment:
Q  122 tcttgcatcaaatgtcaaattttaactcacaattgacacattaacatttctccatattaagtatgagactctccgtgt 199  Q
    ||||||||  ||||| ||||||||||| ||| || |||||||||||| |||||  ||||||| | |||||||||||||    
T  28475662 tcttgcatacaatgtgaaattttaacttacacttaacacattaacatctctcc--attaagtgtcagactctccgtgt 28475737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 174
Target Start/End: Complemental strand, 55050137 - 55050042
Alignment:
Q  77 attaggtatatggataatctccctcatatgtttctcaacatctcatcttgcatcaaatgtcaaattttaactcacaattgacacattaacatttctcc 174  Q
    ||||||||||||||| ||  | || ||||||| ||||||||||  |||| |||| ||||| |   |||||||| || |||||||||||||||||||||    
T  55050137 attaggtatatggatcataacacttatatgttactcaacatctactcttacatccaatgtgac--tttaactcgcacttgacacattaacatttctcc 55050042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 173
Target Start/End: Complemental strand, 39976730 - 39976666
Alignment:
Q  109 tctcaacatctcatcttgcatcaaatgtcaaattttaactcacaattgacacattaacatttctc 173  Q
    |||||||||||  ||||||||| ||||| ||| ||||| | |||||||||||| |||||| ||||    
T  39976730 tctcaacatctactcttgcatctaatgtgaaaatttaaattacaattgacacaataacatatctc 39976666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 201
Target Start/End: Original strand, 42756850 - 42756927
Alignment:
Q  122 tcttgcatcaaatgtcaaattttaactcacaattgacacattaacatttctccatattaagtatgagactctccgtgtct 201  Q
    ||||||||| |||||  || ||| |||||||| |||||||||||||| |||||   |||||| ||||| |||||||||||    
T  42756850 tcttgcatccaatgtagaagttttactcacaaatgacacattaacatctctcc--cttaagtgtgagattctccgtgtct 42756927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1315 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold1315
Description:

Target: scaffold1315; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 14 - 173
Target Start/End: Complemental strand, 679 - 517
Alignment:
Q  14 atattagtcaaagagcaaca--acatgtgagatcgacatcacttcttcaaccaaagtcctaaagcattaggtatatggataatctccctcatatgtttct 111  Q
    |||||||||||| |||||||  ||| |||||||||||||||||| |||| ||||||||||||  |||||||||||| |||||||||||||||||||||||    
T  679 atattagtcaaatagcaacagcacaagtgagatcgacatcactttttcacccaaagtcctaagacattaggtatat-gataatctccctcatatgtttct 581  T
Q  112 caacatctcatcttgc--atcaaatgtcaaattttaactcacaattgacacattaacatttctc 173  Q
    ||||||||  ||||||  ||| |||||  || ||| ||| |||| |||||||||||||| ||||    
T  580 caacatctactcttgcatatccaatgttgaacttttacttacaactgacacattaacatctctc 517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1293 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold1293
Description:

Target: scaffold1293; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 14 - 173
Target Start/End: Original strand, 1392 - 1554
Alignment:
Q  14 atattagtcaaagagcaaca--acatgtgagatcgacatcacttcttcaaccaaagtcctaaagcattaggtatatggataatctccctcatatgtttct 111  Q
    |||||||||||| |||||||  ||| |||||||||||||||||| |||| ||||||||||||  |||||||||||| |||||||||||||||||||||||    
T  1392 atattagtcaaatagcaacagcacaagtgagatcgacatcactttttcacccaaagtcctaagacattaggtatat-gataatctccctcatatgtttct 1490  T
Q  112 caacatctcatcttgc--atcaaatgtcaaattttaactcacaattgacacattaacatttctc 173  Q
    ||||||||  ||||||  ||| |||||  || ||| ||| |||| |||||||||||||| ||||    
T  1491 caacatctactcttgcatatccaatgttgaacttttacttacaactgacacattaacatctctc 1554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 102 - 202
Target Start/End: Original strand, 43387108 - 43387206
Alignment:
Q  102 atatgtttctcaacatctcatcttgcatcaaatgtcaaattttaactcacaattgacacattaacatttctccatattaagtatgagactctccgtgtct 201  Q
    ||||||||||||||||||  | ||||||  |||||  |||||||||||||| ||||||||||||||| ||||  | ||||||| ||||||||||||||||    
T  43387108 atatgtttctcaacatctactattgcattcaatgtgtaattttaactcacacttgacacattaacatctctc--tgttaagtacgagactctccgtgtct 43387205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 95 - 194
Target Start/End: Original strand, 22636320 - 22636417
Alignment:
Q  95 ctccctcatatgtttctcaacatctcatcttgcatcaaatgtcaaattttaactcacaattgacacattaacatttctccatattaagtatgagactctc 194  Q
    |||||| ||||||  ||||||||||  ||||||||  || |||||||||||||||||| |||| | |||||||| |||||  ||||||||| ||||||||    
T  22636320 ctcccttatatgtagctcaacatctactcttgcattcaaagtcaaattttaactcacacttgaaaaattaacatctctcc--attaagtataagactctc 22636417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 176
Target Start/End: Complemental strand, 1992464 - 1992426
Alignment:
Q  138 aaattttaactcacaattgacacattaacatttctccat 176  Q
    ||||||||||||||| ||||||||||||||| |||||||    
T  1992464 aaattttaactcacacttgacacattaacatctctccat 1992426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 174
Target Start/End: Original strand, 17006472 - 17006567
Alignment:
Q  77 attaggtatatggataatctccctcatatgtttctcaacatctcatcttgcatcaaatgtcaaattttaactcacaattgacacattaacatttctcc 174  Q
    ||||||||||||||| ||  | || ||||||| ||||||||||  |||| |||| ||||| |   |||||||| || |||||||||||||||||||||    
T  17006472 attaggtatatggatcataacacttatatgttactcaacatctactcttacatccaatgtgac--tttaactcgcacttgacacattaacatttctcc 17006567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 176
Target Start/End: Original strand, 20306777 - 20306815
Alignment:
Q  138 aaattttaactcacaattgacacattaacatttctccat 176  Q
    ||||||||||||||| ||||||||||||||| |||||||    
T  20306777 aaattttaactcacacttgacacattaacatctctccat 20306815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 174
Target Start/End: Complemental strand, 34159619 - 34159524
Alignment:
Q  77 attaggtatatggataatctccctcatatgtttctcaacatctcatcttgcatcaaatgtcaaattttaactcacaattgacacattaacatttctcc 174  Q
    ||||||||||||||| ||  | || ||||||| ||||||||||  |||| |||| ||||| |   |||||||| || |||||||||||||||||||||    
T  34159619 attaggtatatggatcataacacttatatgttactcaacatctactcttacatccaatgtgac--tttaactcgcacttgacacattaacatttctcc 34159524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 176
Target Start/End: Complemental strand, 40946561 - 40946523
Alignment:
Q  138 aaattttaactcacaattgacacattaacatttctccat 176  Q
    ||||||||||||||| ||||||||||||||| |||||||    
T  40946561 aaattttaactcacacttgacacattaacatctctccat 40946523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 77 - 166
Target Start/End: Original strand, 31737199 - 31737288
Alignment:
Q  77 attaggtatatggataatctccctcatatgtttctcaacatctcatcttgcatcaaatgtcaaattttaactcacaattgacacattaac 166  Q
    |||||||||||| || || || ||  ||||||  |||||||||  ||||||||| ||||| |||||||||||||||||||||||||||||    
T  31737199 attaggtatatgaatcatatcacttgtatgttgttcaacatctactcttgcatccaatgtgaaattttaactcacaattgacacattaac 31737288  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 93 - 194
Target Start/End: Complemental strand, 1599769 - 1599670
Alignment:
Q  93 atctccctcatatgtttctcaacatctcatcttgcatcaaatgtcaaattttaactcacaattgacacattaacatttctccatattaagtatgagactc 192  Q
    ||||| || ||||||||||||||||||  | ||||||  |||||   ||||||||||||| ||||||||||||||| ||||  ||||||| |||||||||    
T  1599769 atctcacttatatgtttctcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctctc--tattaagcatgagactc 1599672  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 176
Target Start/End: Original strand, 7428529 - 7428567
Alignment:
Q  138 aaattttaactcacaattgacacattaacatttctccat 176  Q
    ||||||||||||||| ||||||||||||||| |||||||    
T  7428529 aaattttaactcacacttgacacattaacatctctccat 7428567  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 174
Target Start/End: Original strand, 23410068 - 23410163
Alignment:
Q  77 attaggtatatggataatctccctcatatgtttctcaacatctcatcttgcatcaaatgtcaaattttaactcacaattgacacattaacatttctcc 174  Q
    ||||||||||||||| ||  | || ||||||| ||||||||||  |||| |||| ||||| |   |||||||| || |||||||||||||||||||||    
T  23410068 attaggtatatggatcataacacttatatgttactcaacatctactcttacatccaatgtgac--tttaactcgcacttgacacattaacatttctcc 23410163  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 39 - 198
Target Start/End: Original strand, 9012660 - 9012817
Alignment:
Q  39 tgagatcgacatcacttcttcaaccaaagtcctaaagcattaggtatatggataatctccctcatatgtttctcaacatctcatcttgcatcaaatgtca 138  Q
    |||||| || ||||| || ||| |||||||||||| |||||| ||||| || | | ||| || ||||||| ||||||||||  ||||| ||  | ||| |    
T  9012660 tgagattgatatcacatcgtcatccaaagtcctaaggcattatgtataagggtcagctcacttatatgttgctcaacatctactcttgaattcattgtga 9012759  T
Q  139 aattttaactcacaattgacacattaacatttctccatattaagtatgagactctccgtg 198  Q
    |||||||||| ||| |||||||||||| || |||||  ||||||| ||||||||| ||||    
T  9012760 aattttaactaacacttgacacattaatatgtctcc--attaagtgtgagactcttcgtg 9012817  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 38 - 176
Target Start/End: Original strand, 38015877 - 38016015
Alignment:
Q  38 gtgagatcgacatcacttcttcaaccaaagtcctaaagcattaggtatatggataatctccctcatatgtttctcaacatctcatcttgcatcaaatgtc 137  Q
    ||||||| ||||||||  ||||| ||||| || |||  |||||| ||||||  | ||||| || ||||||| ||||||||||  | ||||||  |||||     
T  38015877 gtgagattgacatcacaacttcacccaaaatcttaagtcattagatatatgagtcatctcacttatatgttgctcaacatctactattgcattcaatgtg 38015976  T
Q  138 aaattttaactcacaattgacacattaacatttctccat 176  Q
      ||||||||||||| ||||||||||||||| |||||||    
T  38015977 ttattttaactcacacttgacacattaacatctctccat 38016015  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 174
Target Start/End: Complemental strand, 4062251 - 4062156
Alignment:
Q  77 attaggtatatggataatctccctcatatgtttctcaacatctcatcttgcatcaaatgtcaaattttaactcacaattgacacattaacatttctcc 174  Q
    ||||||||||||||| ||  | || ||||||| ||||||||||  |||| |||| ||||| |   |||||||| || |||||||||||||||||||||    
T  4062251 attaggtatatggatcataacacttatatgttactcaacatctactcttacatccaatgtgac--tttaactcgcacttgacacattaacatttctcc 4062156  T

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Target: scaffold0159 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 140 - 202
Target Start/End: Original strand, 33291 - 33351
Alignment:
Q  140 attttaactcacaattgacacattaacatttctccatattaagtatgagactctccgtgtctg 202  Q
    ||||||||||||| ||||||||||||||| ||| |  |||||||||||||||||| |||||||    
T  33291 attttaactcacatttgacacattaacatctcttc--attaagtatgagactctctgtgtctg 33351  T

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Target: scaffold0012 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 174
Target Start/End: Original strand, 31003 - 31098
Alignment:
Q  77 attaggtatatggataatctccctcatatgtttctcaacatctcatcttgcatcaaatgtcaaattttaactcacaattgacacattaacatttctcc 174  Q
    ||||||||||||||| ||  | || ||||||| ||||||||||  |||| |||| ||||| |   |||||||| || |||||||||||||||||||||    
T  31003 attaggtatatggatcataacacttatatgttactcaacatctactcttacatccaatgtgac--tttaactcgcacttgacacattaacatttctcc 31098  T

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