View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16853_low_29 (Length: 276)
Name: NF16853_low_29
Description: NF16853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16853_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 5421167 - 5421408
Alignment:
| Q |
1 |
ttcataaattaataatagtttaatttaaggtacctagaaggattatgtatgaaaaaacacgagccataaaagaaatttcaacaaaccatgcatcatcatc |
100 |
Q |
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| T |
5421167 |
ttcataaattaataatagtttaatttaaggtacctaaaaggattatgtatgaaaaaacacgagccataaaagaaatttcaacaaaccatgcatcatcatc |
5421266 |
T |
|
| Q |
101 |
atcatttccctgtagtcaattcataggaaccataatgaatatacattgnnnnnnntatacaataagatgatatgaatgatagcaataattagttagtctt |
200 |
Q |
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| T |
5421267 |
atcatttccctgtagtcaatacataggaaccataatgaatatacattgaaaaaaatatacaataatatgatatgaattatagcaataattagttagtctt |
5421366 |
T |
|
| Q |
201 |
acattttttggcgctgttagaactaaataatatgtgataggg |
242 |
Q |
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| T |
5421367 |
acattttttggcgctgttagaactaaataatatgtgataggg |
5421408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 41 - 220
Target Start/End: Original strand, 2683063 - 2683242
Alignment:
| Q |
41 |
gattatgtatgaaaaaacacgagccataaaagaaatttcaacaaaccatgcatcatcatcatcatttccctgtagtcaattcataggaaccataatgaat |
140 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||| |
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| T |
2683063 |
gattatgtaggaaaaaacacgagccataaaagaaatttcaacaaaccatgcatcatcatcattatttccctgtaatcaattcataggcaccataatgaat |
2683162 |
T |
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| Q |
141 |
atacattgnnnnnnntatacaataagatgatatgaatgatagcaataattagttagtcttacattttttggcgctgttag |
220 |
Q |
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| T |
2683163 |
atacattgaaaagaatatacaataagatgatatgaattatagcaataatcacttagtcttacattttttggtgttgttag |
2683242 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 41 - 220
Target Start/End: Complemental strand, 5480248 - 5480069
Alignment:
| Q |
41 |
gattatgtatgaaaaaacacgagccataaaagaaatttcaacaaaccatgcatcatcatcatcatttccctgtagtcaattcataggaaccataatgaat |
140 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||| |
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| T |
5480248 |
gattatgtaggaaaaaacacgagccataaaagaaatttcaacaaaccatgcatcatcatcattatttccctgtaatcaattcataggcaccataatgaat |
5480149 |
T |
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| Q |
141 |
atacattgnnnnnnntatacaataagatgatatgaatgatagcaataattagttagtcttacattttttggcgctgttag |
220 |
Q |
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| T |
5480148 |
atacattgaaaagaatatacaataagatgatatgaattatagcaataatcacttagtcttacattttttggtgttgttag |
5480069 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 41 - 220
Target Start/End: Original strand, 45006489 - 45006668
Alignment:
| Q |
41 |
gattatgtatgaaaaaacacgagccataaaagaaatttcaacaaaccatgcatcatcatcatcatttccctgtagtcaattcataggaaccataatgaat |
140 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||| |
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| T |
45006489 |
gattatgtaggaaaaaacacgagccataaaagaaatttcaacaaaccatgcatcatcatcattatttccctgtaatcaattcataggcaccataatgaat |
45006588 |
T |
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| Q |
141 |
atacattgnnnnnnntatacaataagatgatatgaatgatagcaataattagttagtcttacattttttggcgctgttag |
220 |
Q |
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|||||||| |||||||||||||||||||||| ||||||||||| | ||||||||||||||||||| | |||||| |
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| T |
45006589 |
atacattgaaaagaatatacaataagatgatatgaattatagcaataatcacttagtcttacattttttggtgttgttag |
45006668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 116; Significance: 5e-59; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 39 - 220
Target Start/End: Complemental strand, 34217692 - 34217507
Alignment:
| Q |
39 |
aggattatgtatgaaaaaacacgagccataaaagaaatttcaacaaaccatgcatcatcatcatcatttccctgtagtcaattcataggaaccataatga |
138 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||| |
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| T |
34217692 |
aggattatgtaggaaaaaacacgagccataaaagaaatttcaaaaaaccatgcatcatcatcattatttccctgtaatcaattcatgggaaccataatga |
34217593 |
T |
|
| Q |
139 |
atatacattgnnnnnnntatacaataagatgatatgaatgatagcaataa----ttagttagtcttacattttttggcgctgttag |
220 |
Q |
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|||||||||| |||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||| |||||||| |
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| T |
34217592 |
atatacattgaaaagaatatacaataagatgatatgaattatagcaataatcacttaattagtcttacattttttggtgctgttag |
34217507 |
T |
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