View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16853_low_3 (Length: 553)
Name: NF16853_low_3
Description: NF16853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16853_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 75 - 537
Target Start/End: Complemental strand, 25707636 - 25707184
Alignment:
| Q |
75 |
gtattacactatgtgcatgtttggaactaggatgtctagtttttgtctccgaatgtgatttttacattgatgtttgtttggtt--gtttctatacagata |
172 |
Q |
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| T |
25707636 |
gtatcacactatgtgcatgtttgaaatcaagatgtctagtttttgtctccgaatgtgattctgacatcgatgtttgtttggttttgtttctatacagata |
25707537 |
T |
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| Q |
173 |
cgagtattgttcctcctcttatctatgctgtgatgggaagctcaagagacattgcaattggacctgtagctgtagtgtctatgcttttatcttccttggt |
272 |
Q |
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| T |
25707536 |
cgagtattgttcctcctcttatctatgctgtgatgggaagctcaagagacattgcaattggacctgtagctgtagtgtctatgcttttatcttccttggt |
25707437 |
T |
|
| Q |
273 |
caccaatgtcatagatcctgttgctaatcctcatgcctatagagattttatctttaccgtcaccttcttcgccggaatttttcaagctgcatttggtatt |
372 |
Q |
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| T |
25707436 |
caccaatgtcatagatcctgttgctaatcctcatgcctatagagattttatctttaccgtcaccttcttcaccggaatttttcaagctgcatttggtatt |
25707337 |
T |
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| Q |
373 |
ttcaggtgctggttttctcattagcatgcaatatttcttgtgaatttcttgtaaattttctgttttgcccttataaaccaaatagtttgtttatttatcc |
472 |
Q |
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| T |
25707336 |
ttcaggtgctggttttctcattagcatgcaaaattt------------ttgtaaattttctgttttgtccttataaaccaaatagtttgtttatttatcc |
25707249 |
T |
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| Q |
473 |
ttcaatattttcaggttgggttttcttgtggattttctttcacatgctgcactagttggattcat |
537 |
Q |
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| T |
25707248 |
ttcaatatttacaggttgggttttcttgtggattttctttcacatgctgcactagttggattcat |
25707184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 2e-23; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 181 - 269
Target Start/End: Complemental strand, 33270784 - 33270696
Alignment:
| Q |
181 |
gttcctcctcttatctatgctgtgatgggaagctcaagagacattgcaattggacctgtagctgtagtgtctatgcttttatcttcctt |
269 |
Q |
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||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||| |||||||| |||| |||||||||| |
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| T |
33270784 |
gttcctcctcttatctatgctgtgatggggagttcaagagaaattgcaattggacctgtagccgtagtgtcactgctgctatcttcctt |
33270696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 484 - 537
Target Start/End: Complemental strand, 33270399 - 33270346
Alignment:
| Q |
484 |
caggttgggttttcttgtggattttctttcacatgctgcactagttggattcat |
537 |
Q |
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| T |
33270399 |
caggttgggatttcttgtggattttttgtcacatgctgcacttgtaggattcat |
33270346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 484 - 534
Target Start/End: Original strand, 39751605 - 39751655
Alignment:
| Q |
484 |
caggttgggttttcttgtggattttctttcacatgctgcactagttggatt |
534 |
Q |
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| T |
39751605 |
caggttggggttccttgtggattttctgtcacatgctgcaattgttggatt |
39751655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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