View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16853_low_30 (Length: 276)
Name: NF16853_low_30
Description: NF16853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16853_low_30 |
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Alignment Details
Target: chr6 (Bit Score: 179; Significance: 1e-96; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 17 - 266
Target Start/End: Original strand, 13189023 - 13189271
Alignment:
| Q |
17 |
aggaattggtatctttctaagtttgaagatttcccaaaaaatgttatggctgttatcccatttgtgttttaaattgttgtaacattaacccctgttatag |
116 |
Q |
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| T |
13189023 |
aggaattggtatctttctaagtttgaagatttcccaaaaaatgttatggctgttatcccatttgtgttttaaattgttgaaacattaatccctgttgtag |
13189122 |
T |
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| Q |
117 |
acgaggcatttggttgtgacatttataatatgttgtattgttgtgcatgtatgttggaataannnnnnnnnnnnnngtcaaatagtccaatagttagagg |
216 |
Q |
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| T |
13189123 |
acgaggcatttggttgtgacatttataatatgttgtatccttgtgcatgtatgttggaataa-tttttttttttttgtcaaatagtccaatagttagaga |
13189221 |
T |
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| Q |
217 |
aaattcagggttggagcctctacccctgtatatattattcaatgtctctg |
266 |
Q |
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| T |
13189222 |
aaattcagggttggagcctctacccctgtatatattattcaatgtctctg |
13189271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 17 - 177
Target Start/End: Original strand, 13166148 - 13166308
Alignment:
| Q |
17 |
aggaattggtatctttctaagtttgaagatttcccaaaaaatgttatggctgttatcccatttgtgttttaaattgttgtaacattaacccctgttatag |
116 |
Q |
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| T |
13166148 |
aggaattggtatctttctaagtttgaagatttcccaaaaaatgttaaggctgttatcccatttgtgttttaaattgttgtaacattaatccctaatgtgg |
13166247 |
T |
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| Q |
117 |
acgaggcatttggttgtgacatttataatatgttgtattgttgtgcatgtatgttggaata |
177 |
Q |
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| T |
13166248 |
acggggcatttggttgtgacatttataaaatgttgtattgttgtgcatgtatgttggaata |
13166308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 116 - 178
Target Start/End: Original strand, 13192140 - 13192202
Alignment:
| Q |
116 |
gacgaggcatttggttgtgacatttataatatgttgtattgttgtgcatgtatgttggaataa |
178 |
Q |
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| T |
13192140 |
gacgagacatttggttgtgacatttataatatgttgtattgttgtgcatgtatgttggaataa |
13192202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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