View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16853_low_31 (Length: 270)
Name: NF16853_low_31
Description: NF16853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16853_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 2488445 - 2488207
Alignment:
| Q |
13 |
atcatcaaatcaatgtcttttgttgagatgtatagccttactatccaaaacacgtttatgtgctgatgctgaaatctgtgatactatcaaaagtgacaat |
112 |
Q |
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| T |
2488445 |
atcatcaaatcaatgtcttttgttgagatgtatagccttactatccaaaacacatttatgtgctgatgctgaaatctgtgatactatcaaaagtgacaat |
2488346 |
T |
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| Q |
113 |
accttgtaaagagtctgtataagaatcttctcatcaaaaggccagctggttatgtgtttcccaggagctaaaggaatattgaaggatacaaggaatcaga |
212 |
Q |
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| T |
2488345 |
accttgtaaagagtctgtataagaatcttctcatcaaaaggccagccggttatgtgtttcccaggagctgaaggaatattgaaggatacaaggaatcaga |
2488246 |
T |
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| Q |
213 |
agcgagaacaatgtccaaaagtatgaatgatgacagttt |
251 |
Q |
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| T |
2488245 |
agcgagaacaatgtccaaaagtatgaatgatgacagttt |
2488207 |
T |
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Back To:
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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 161
Target Start/End: Original strand, 41592829 - 41592878
Alignment:
| Q |
112 |
taccttgtaaagagtctgtataagaatcttctcatcaaaaggccagctgg |
161 |
Q |
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| T |
41592829 |
taccttgtaaagagactgtataagaagtttttcatcaaaagaccagctgg |
41592878 |
T |
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