View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16853_low_32 (Length: 261)
Name: NF16853_low_32
Description: NF16853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16853_low_32 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 1517180 - 1516955
Alignment:
| Q |
18 |
atgaagttcacttgtgtccacaagatgagccgtagctagcctatatgccgacttcatcaaataagaggcgacaatctcaggataccaagtaatcctannn |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1517180 |
atgaagttcacttgtgtccacaagatgagccgtagctagcctatatgccgacttcatcaaataagaggcgacaatctcaggataccaagtaatcctattt |
1517081 |
T |
|
| Q |
118 |
nnnnnaactgggaatatagcaaaatatcattaatattataagccatagtggtatggaacatacctcaaatcacttcaacatgccaagacttggaatggtg |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1517080 |
tttttaactgggaatatagcaaaatatcattaatattataagccatagtggtatggaacatacctcaaatcacttcaacatgccaagacttggaatggtg |
1516981 |
T |
|
| Q |
218 |
atgtagcaagtcttcgacacagatct |
243 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
1516980 |
atgtagcaagtcttcgacacagatct |
1516955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 2908515 - 2908295
Alignment:
| Q |
18 |
atgaagttcacttgtgtccacaagatgagccgtagctagcctatatgccgacttcatcaaataagaggcgacaatctcaggataccaagtaatcctannn |
117 |
Q |
| |
|
||||||||||||||||||||||| |||||| || ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2908515 |
atgaagttcacttgtgtccacaaaatgagcgataactagcctatatgccgacttcatcgaataagaggtcacaatctcaggataccaagtaatcctattt |
2908416 |
T |
|
| Q |
118 |
nnnnnaactgggaatatagcaaaatatcattaatattataagccatagtggtatggaacatacctcaaatcacttcaacatgccaagacttggaatggtg |
217 |
Q |
| |
|
||||||||||||||| |||| || ||||||||||| ||||||||||| | | ||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2908415 |
gctttaactgggaatatagcgaaatgccaataatattataaaccatagtggtaggaagcatacctcaaatcacttcaacatgccaagccttggaatggtg |
2908316 |
T |
|
| Q |
218 |
atgtagcaagtcttcgacaca |
238 |
Q |
| |
|
||| ||||||||||||||||| |
|
|
| T |
2908315 |
atgcagcaagtcttcgacaca |
2908295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University