View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16853_low_33 (Length: 255)
Name: NF16853_low_33
Description: NF16853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16853_low_33 |
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| [»] scaffold0440 (1 HSPs) |
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Alignment Details
Target: scaffold0440 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: scaffold0440
Description:
Target: scaffold0440; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 11076 - 11311
Alignment:
| Q |
1 |
agtataagttgattcacgctcagaagcaagttgaactttctgaaattccttcaatgtggtttggaaatctcttgccaacttagcatcttcaattttctta |
100 |
Q |
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| T |
11076 |
agtataagttgattcgcgctcagaagcaagttgaactttctgaaattccttcaatgtggtttggaaatctcttgccaacttagcatcttcaattttctta |
11175 |
T |
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| Q |
101 |
tttgcctgcttaaacaaagcacaacaaattcaagtttagctagcaatcttaattttcaatcatgaaaaggaaacaacaaattggactacaaaacacatag |
200 |
Q |
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| T |
11176 |
tttgcctacttaaacaaagcacaacaaattcaagtttagctagcaatcttaattttcaatcatgaaaaggaaacaacaaattggactacaaaacacatag |
11275 |
T |
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| Q |
201 |
caaaaacccacagctcaattgcaagagcagaaaaac |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
11276 |
caaaaacccacagctcaattgcaagagcagaaaaac |
11311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 32640650 - 32640406
Alignment:
| Q |
1 |
agtataagttgattcacgctcagaagcaag---ttgaactttctgaaattccttcaatgtggtttggaaatctcttgccaacttagcatcttcaattttc |
97 |
Q |
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|||||||| ||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32640650 |
agtataagctgattcacgctcagaagcaagctgttgaactttctgaaattcttgcaatgtggtttggaaatctcttgccaacttagcatcttcaattttc |
32640551 |
T |
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| Q |
98 |
ttatttgcctgcttaaacaaagcacaacaaattcaagtttagctagcaatcttaattttcaatcatgaaaaggaaacaacaaattggactaca------a |
191 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||| ||| | |
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| T |
32640550 |
ttatttgcctgcttaaacaaagcacaacaaattcaagtttagctagcaatcttaattttcaatcatgaaaacaaaacagcaagttggaccacaaaacaca |
32640451 |
T |
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| Q |
192 |
aacacatagcaaaaacccacagctcaattgcaagagcagaaaaac |
236 |
Q |
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| T |
32640450 |
aacacatagctaaaaccaaaagctcaattacaagagtagaaaaac |
32640406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 89 - 176
Target Start/End: Original strand, 12663515 - 12663601
Alignment:
| Q |
89 |
tcaattttcttatttgcctgcttaaacaaagcacaacaaattcaagtttagctagcaatcttaattttcaatcatgaaaaggaaacaa |
176 |
Q |
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||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
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| T |
12663515 |
tcaattttcttattttcctgcttaaaaaaagcacaacaaattcaagtttagctagcaaacttaattttcaat-atgaaaaggaaacaa |
12663601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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