View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16853_low_34 (Length: 255)
Name: NF16853_low_34
Description: NF16853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16853_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 11469074 - 11468838
Alignment:
| Q |
1 |
tgcaaacattcaaaaaagatcaaatatagtaa----gggcatgtgcctaatgtctctacacagttttaannnnnnnnaagtaataatgcttcaagagttc |
96 |
Q |
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|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
11469074 |
tgcatacattcaaaaaagatcaaatatagtaattaagggcatgtgcctaatgtctctacacagttttaatttttt--aagtaataatgcttcaagagttc |
11468977 |
T |
|
| Q |
97 |
acctcgtgttaattgagacctcaaaacaaagacataaaattaggcaatatctgttctttgtcctggattttgaaatgtatatataagttgcaaacttgtt |
196 |
Q |
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||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
11468976 |
acctcgtgttaattgagacctcaaaacaa-gacataaaataaggcaatatctgttctgtgtcctggattttgaaatgtatatataagttgcaaacttgtt |
11468878 |
T |
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| Q |
197 |
tatacatacttcatatactacattatattcatcaaaacaa |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
11468877 |
tatacatacttcatatactacattatattcatcaaaacaa |
11468838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 11522387 - 11522623
Alignment:
| Q |
1 |
tgcaaacattcaaaaaagatcaaatatagtaa----gggcatgtgcctaatgtctctacacagttttaannnnnnnnaagtaataatgcttcaagagttc |
96 |
Q |
| |
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|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
11522387 |
tgcatacattcaaaaaagatcaaatatagtaattaagggcatgtgcctaatgtctctacacagttttaatttttt--aagtaataatgcttcaagagttc |
11522484 |
T |
|
| Q |
97 |
acctcgtgttaattgagacctcaaaacaaagacataaaattaggcaatatctgttctttgtcctggattttgaaatgtatatataagttgcaaacttgtt |
196 |
Q |
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||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
11522485 |
acctcgtgttaattgagacctcaaaacaa-gacataaaataaggcaatatctgttctgtgtcctggattttgaaatgtatatataagttgcaaacttgtt |
11522583 |
T |
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| Q |
197 |
tatacatacttcatatactacattatattcatcaaaacaa |
236 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
11522584 |
tatacatacttcatatactacattatattcatcaaaacaa |
11522623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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