View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16853_low_38 (Length: 240)

Name: NF16853_low_38
Description: NF16853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16853_low_38
NF16853_low_38
[»] chr6 (4 HSPs)
chr6 (5-233)||(25741723-25741951)
chr6 (5-233)||(25747634-25747862)
chr6 (8-61)||(25779342-25779395)
chr6 (1-45)||(16530591-16530635)
[»] chr2 (5 HSPs)
chr2 (8-68)||(23864557-23864617)
chr2 (8-68)||(20571188-20571248)
chr2 (131-172)||(35790991-35791032)
chr2 (8-68)||(23757200-23757260)
chr2 (138-178)||(42223029-42223069)
[»] chr7 (1 HSPs)
chr7 (137-183)||(45687911-45687957)
[»] chr5 (2 HSPs)
chr5 (139-172)||(6527507-6527540)
chr5 (139-183)||(21144276-21144320)
[»] chr4 (1 HSPs)
chr4 (138-172)||(16734377-16734411)
[»] chr3 (2 HSPs)
chr3 (141-183)||(25125084-25125126)
chr3 (139-172)||(18359536-18359569)
[»] chr1 (2 HSPs)
chr1 (137-186)||(17890360-17890409)
chr1 (148-176)||(24107311-24107339)


Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 5 - 233
Target Start/End: Original strand, 25741723 - 25741951
Alignment:
Q  5 gacattgcaggaaatccaaaccatcaaatgcatgctcaacctgatgggccgatcatttaccagctctacagctgaaccacaaaaatcggtcatccaatcc 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  25741723 gacattgcaggaaatccaaaccatcaaatgcatgctcaacctgatgggccgatcatttaccagctctacagctgaaccacaaaaatcggccatccaatcc 25741822  T
Q  105 tgcatatgaagcagcacaacagcttatataacagggttaatacatgtttacccctataatattagcgagttccgatttatctgtnnnnnnnntttattta 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||        ||||||||    
T  25741823 tgcatatgaagcagcacaacagcttatataacagggttaatacatgtttacccctataatattagcgagtttcgatttatctgtaaaaaaaatttattta 25741922  T
Q  205 atttcaatcctttaattcaaggtgaaaaa 233  Q
    ||||||||||||||||||||||| |||||    
T  25741923 atttcaatcctttaattcaaggtaaaaaa 25741951  T

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Target: chr6; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 5 - 233
Target Start/End: Original strand, 25747634 - 25747862
Alignment:
Q  5 gacattgcaggaaatccaaaccatcaaatgcatgctcaacctgatgggccgatcatttaccagctctacagctgaaccacaaaaatcggtcatccaatcc 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  25747634 gacattgcaggaaatccaaaccatcaaatgcatgctcaacctgatgggccgatcatttaccagctctacagctgaaccacaaaaatcggccatccaatcc 25747733  T
Q  105 tgcatatgaagcagcacaacagcttatataacagggttaatacatgtttacccctataatattagcgagttccgatttatctgtnnnnnnnntttattta 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||        ||||||||    
T  25747734 tgcatatgaagcagcacaacagcttatataacagggttaatacatgtttacccctataatattagcgagtttcgatttatctgtaaaaaaaatttattta 25747833  T
Q  205 atttcaatcctttaattcaaggtgaaaaa 233  Q
    ||||||||||||||||||||||| |||||    
T  25747834 atttcaatcctttaattcaaggtaaaaaa 25747862  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 25779395 - 25779342
Alignment:
Q  8 attgcaggaaatccaaaccatcaaatgcatgctcaacctgatgggccgatcatt 61  Q
    ||||||||||||||||| |||||||| || || ||||| | |||||||||||||    
T  25779395 attgcaggaaatccaaagcatcaaatacacgcgcaacccgttgggccgatcatt 25779342  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 16530635 - 16530591
Alignment:
Q  1 cacagacattgcaggaaatccaaaccatcaaatgcatgctcaacc 45  Q
    ||||||||||||| |||||||||| |||||||| ||||| |||||    
T  16530635 cacagacattgcaagaaatccaaagcatcaaatacatgcacaacc 16530591  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 23864557 - 23864617
Alignment:
Q  8 attgcaggaaatccaaaccatcaaatgcatgctcaacctgatgggccgatcatttaccagc 68  Q
    |||||||||| |||||| |||||||| ||||| ||||| ||||| ||||||||||||||||    
T  23864557 attgcaggaagtccaaagcatcaaatacatgcgcaacccgatggaccgatcatttaccagc 23864617  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 20571248 - 20571188
Alignment:
Q  8 attgcaggaaatccaaaccatcaaatgcatgctcaacctgatgggccgatcatttaccagc 68  Q
    |||||||| |||||||| |||||||| ||||| ||| | ||||| ||||||||||||||||    
T  20571248 attgcagggaatccaaagcatcaaatacatgcccaaaccgatggaccgatcatttaccagc 20571188  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 172
Target Start/End: Original strand, 35790991 - 35791032
Alignment:
Q  131 tataacagggttaatacatgtttacccctataatattagcga 172  Q
    ||||| ||||||||||||| ||||||||| ||||||||||||    
T  35790991 tataatagggttaatacatctttacccctgtaatattagcga 35791032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 23757200 - 23757260
Alignment:
Q  8 attgcaggaaatccaaaccatcaaatgcatgctcaacctgatgggccgatcatttaccagc 68  Q
    |||||||| ||||||||  ||||||| ||||| ||| | ||||| ||||||||||||||||    
T  23757200 attgcagggaatccaaattatcaaatacatgcccaaaccgatggaccgatcatttaccagc 23757260  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 178
Target Start/End: Original strand, 42223029 - 42223069
Alignment:
Q  138 gggttaatacatgtttacccctataatattagcgagttccg 178  Q
    ||||||||| |||||||||||||||||||||| || |||||    
T  42223029 gggttaatatatgtttacccctataatattagtgatttccg 42223069  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 45687957 - 45687911
Alignment:
Q  137 agggttaatacatgtttacccctataatattagcgagttccgattta 183  Q
    ||||||||||||||||||||||| |||||||||||| || |||||||    
T  45687957 agggttaatacatgtttacccctctaatattagcgattttcgattta 45687911  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 172
Target Start/End: Complemental strand, 6527540 - 6527507
Alignment:
Q  139 ggttaatacatgtttacccctataatattagcga 172  Q
    ||||||||||||||||||||||||||||||||||    
T  6527540 ggttaatacatgtttacccctataatattagcga 6527507  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 183
Target Start/End: Complemental strand, 21144320 - 21144276
Alignment:
Q  139 ggttaatacatgtttacccctataatattagcgagttccgattta 183  Q
    |||||||||||||||||||||  ||||||||||| ||||| ||||    
T  21144320 ggttaatacatgtttacccctgcaatattagcgatttccggttta 21144276  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 172
Target Start/End: Complemental strand, 16734411 - 16734377
Alignment:
Q  138 gggttaatacatgtttacccctataatattagcga 172  Q
    ||||||||||||||||||||||||||||| |||||    
T  16734411 gggttaatacatgtttacccctataatataagcga 16734377  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 183
Target Start/End: Complemental strand, 25125126 - 25125084
Alignment:
Q  141 ttaatacatgtttacccctataatattagcgagttccgattta 183  Q
    ||||||||||||||||||| |||||||||||| || |||||||    
T  25125126 ttaatacatgtttacccctgtaatattagcgattttcgattta 25125084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 172
Target Start/End: Complemental strand, 18359569 - 18359536
Alignment:
Q  139 ggttaatacatgtttacccctataatattagcga 172  Q
    ||||||||||||||||||||| ||||||||||||    
T  18359569 ggttaatacatgtttacccctgtaatattagcga 18359536  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 186
Target Start/End: Complemental strand, 17890409 - 17890360
Alignment:
Q  137 agggttaatacatgtttacccctataatattagcgagttccgatttatct 186  Q
    |||||||||||||||||| ||   |||||||||||| |||||||||||||    
T  17890409 agggttaatacatgtttatcctagtaatattagcgatttccgatttatct 17890360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 176
Target Start/End: Complemental strand, 24107339 - 24107311
Alignment:
Q  148 atgtttacccctataatattagcgagttc 176  Q
    |||||||||||||||||||||||||||||    
T  24107339 atgtttacccctataatattagcgagttc 24107311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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