View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16853_low_39 (Length: 239)
Name: NF16853_low_39
Description: NF16853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16853_low_39 |
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Alignment Details
Target: chr2 (Bit Score: 170; Significance: 2e-91; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 35106033 - 35105804
Alignment:
| Q |
1 |
ttatgctcatctaaaaagaaagggtatttttgccttcaaggatgatcaaaggcttgagaaaggagaatccctttcaccgcaacttctacaagcaattcaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
35106033 |
ttatgctcatctaaaaagaaagggtatttttgccttcaaggatgatcaaaggcttgagaaaggagaatccctttcgccgcaacttcttcaagcaattcaa |
35105934 |
T |
|
| Q |
101 |
agttcaagaatttctattgttgtcttctctcaaagatatgccgattcaacgtggtgtttggaagagatggctactattgctgaatgccatgaaaaattga |
200 |
Q |
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| T |
35105933 |
aattctcgggtttctattgttgtcttctctgaaagatatgccgagtcaacatggtgtttggaagagatggctactgttgctgaatgccgtaaaagattga |
35105834 |
T |
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| Q |
201 |
aacaaactgttttccctggtttttatgatg |
230 |
Q |
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| T |
35105833 |
aacaaactgttttccctgttttttatgatg |
35105804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 3 - 230
Target Start/End: Complemental strand, 35183980 - 35183753
Alignment:
| Q |
3 |
atgctcatctaaaaagaaagggtatttttgccttcaaggatgatcaaaggcttgagaaaggagaatccctttcaccgcaacttctacaagcaattcaaag |
102 |
Q |
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|||||||||||| || ||||||||||| || ||||||||||| |||| ||||| ||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
35183980 |
atgctcatctaacaactaagggtattttcgctttcaaggatgacaaaagacttgaaaaaggagaatccctttcgccgcaacttctacaagcaattcaaag |
35183881 |
T |
|
| Q |
103 |
ttcaagaatttctattgttgtcttctctcaaagatatgccgattcaacgtggtgtttggaagagatggctactattgctgaatgccatgaaaaattgaaa |
202 |
Q |
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| T |
35183880 |
ttctcggatttctattgttgtcttctctaaaaattatgcggagtcaacattatgtttggaagagatggccactattgctgaatatcatacagaattgaaa |
35183781 |
T |
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| Q |
203 |
caaactgttttccctggtttttatgatg |
230 |
Q |
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| T |
35183780 |
cagactgttttccctattttttatgatg |
35183753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 35055120 - 35054891
Alignment:
| Q |
1 |
ttatgctcatctaaaaagaaagggtatttttgccttcaaggatgatcaaaggcttgagaaaggagaatccctttcaccgcaacttctacaagcaattcaa |
100 |
Q |
| |
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|||||||||||||| |||||| ||||||||||||||||||||||| |||| |||||||||||||||| |||||||||| |||||||||||||||| | |
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| T |
35055120 |
ttatgctcatctaacaagaaaaggtatttttgccttcaaggatgacaaaagtcttgagaaaggagaatttatttcaccgcagcttctacaagcaattcga |
35055021 |
T |
|
| Q |
101 |
agttcaagaatttctattgttgtcttctctcaaagatatgccgattcaacgtggtgtttggaagagatggctactattgctgaatgccatgaaaaattga |
200 |
Q |
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| T |
35055020 |
aattcgcgaatttttattgttgtcttctctaaaacatatgccgaatcaacttggtgtttggaagagatggctgcaattgctgattgttgtgagtatttca |
35054921 |
T |
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| Q |
201 |
aacaaactgttttccctggtttttatgatg |
230 |
Q |
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| T |
35054920 |
aacaaacagttttccctattttttatgatg |
35054891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 35177984 - 35177756
Alignment:
| Q |
1 |
ttatgctcatctaaaaagaaagggtatttttgccttcaaggatgatcaaaggcttgagaaaggagaatccctttcaccgcaacttctacaagcaattcaa |
100 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||| |||||||||||| ||||||| ||||||||||||| |||||| | |||||||| |||||||||| | |
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| T |
35177984 |
ttatgctcatctaacaagaaaaggtatttttgcgttcaaggatgataaaaggctcgagaaaggagaatgcctttcgctgcaacttcgacaagcaattgca |
35177885 |
T |
|
| Q |
101 |
agttcaagaatttctattgttgtcttctctcaaagatatgccgattcaacgtggtgtttggaagagatggctactattgctgaatgccatgaaaaattga |
200 |
Q |
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| |||| | || ||||| ||||||||||| |||||||||| || ||||| |||||||||||||| ||||||||||||| |||||| | | || || |
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| T |
35177884 |
aattcacggatatctatcgttgtcttctcagaaagatatgctgagtcaacatggtgtttggaagaaatggctactattgttgaatgtcgtagcaatttct |
35177785 |
T |
|
| Q |
201 |
aacaaactgttttccctggtttttatgat |
229 |
Q |
| |
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||||||||||||||||| |||||||||| |
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| T |
35177784 |
tacaaactgttttccctgttttttatgat |
35177756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 35169693 - 35169510
Alignment:
| Q |
1 |
ttatgctcatctaaaaagaaagggtatttttgccttcaaggatgatcaaaggcttgagaaaggagaatccctttcaccgcaacttctacaagcaattcaa |
100 |
Q |
| |
|
|||||||||||||| ||||||||| |||| ||||||||||||||| ||||||| ||||||||||||| | ||||| |||||| || |||||||||| | |
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| T |
35169693 |
ttatgctcatctaactagaaagggtgttttcgccttcaaggatgataaaaggctagagaaaggagaatgcttttcaacgcaacatcgacaagcaattaca |
35169594 |
T |
|
| Q |
101 |
agttcaagaatttctattgttgtcttctctcaaagatatgccgattcaacgtggtgtttggaagagatggctactattgctgaa |
184 |
Q |
| |
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| |||| | |||||||||||||||||||| |||||||||| || ||||| |||||||||||||| |||||||| |||| |||| |
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| T |
35169593 |
aattcacggatttctattgttgtcttctcagaaagatatgctgagtcaacatggtgtttggaagaaatggctaccattgttgaa |
35169510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 178
Target Start/End: Original strand, 25484341 - 25484514
Alignment:
| Q |
5 |
gctcatctaaaaagaaagggtatttttgccttcaaggatgatcaaaggcttgagaaaggagaatccctttcaccgcaacttctacaagcaattcaaagtt |
104 |
Q |
| |
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|||||||| || ||||| |||||||| ||||||||||||| | ||| ||||||||||| || ||||||| ||||||||||||||||||||| | |
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| T |
25484341 |
gctcatctcaatagaaaaggtattttcaccttcaaggatgacaagcagctacagaaaggagaagccatttcaccccaacttctacaagcaattcaacagt |
25484440 |
T |
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| Q |
105 |
caagaatttctattgttgtcttctctcaaaga-tatgccgattcaacgtggtgtttggaagagatggctactatt |
178 |
Q |
| |
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|| | |||||||| ||||| ||||| |||||| ||||| |||||| ||||||||||| || |||||| ||||| |
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| T |
25484441 |
cacgcatttctatcgttgttttctc-caaagattatgcttcttcaacatggtgtttggatgaaatggctgctatt |
25484514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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