View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16853_low_4 (Length: 530)
Name: NF16853_low_4
Description: NF16853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16853_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 490; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 14 - 511
Target Start/End: Complemental strand, 42892526 - 42892029
Alignment:
| Q |
14 |
acagacatatgaggaagaggaggagcagcagcagcacgtgcagccacctcccacaccggtgcaggtattttggcctccctttcctgcaccagtagtaggg |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42892526 |
acagacatatgaggaagaggaggagcagcagcagcacgtgcagccacctcccacaccggtgcaggtattttggcctccctttcctgcaccagtagtaggg |
42892427 |
T |
|
| Q |
114 |
aggatttcattgattcctatttgtcatcagacacacttccatcatcagaaaaatcatcaaatgttctcatatcaagctggtaacgcagcatcccacctat |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42892426 |
aggatttcattgattcctatttgtcatcagacacacttccatcatcagaaaaatcatcaaatgttctcatatcaagctggtaacgcagcatcccacctat |
42892327 |
T |
|
| Q |
214 |
cccaccaaagcctttgcaaaattgtgaaccttcttgcgatttgttggtgacaatctcaagagtgcaaccaaactgtttgtattcatttgcaaaccactca |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42892326 |
cccaccaaagcctttgcaaaattgtgaaccttcttgcgatttgttggtgacaatctcaagagtgcaaccaaactgtttgtattcatttgcaaaccactca |
42892227 |
T |
|
| Q |
314 |
accagagacagcatttcctgaacctcataatcagaagagttttcaggatctctaaagttactttggttggcttcctgttccttgttgaagtgtttaatga |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |
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| T |
42892226 |
accagagacagcatttcctgaacctcataatcagaagagttttcaggatctctaaaattactttggttggcttcctgttgcttgttgaagtgtttaatga |
42892127 |
T |
|
| Q |
414 |
caatttccccggtagtactattttttaaaacatacctagtcatatccagattttcccagacaataagtgtctcaacagctcctgcatccagagcttgt |
511 |
Q |
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| T |
42892126 |
caatttccccggtagtactattttttaaaacatacctagtcatatccagattttcccagacaataagtgtctcaacagctcctgcatccagagcttgt |
42892029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 24 - 511
Target Start/End: Complemental strand, 28908664 - 28908177
Alignment:
| Q |
24 |
gaggaagaggaggagcagcagcagcacgtgcagccacctcccacaccggtgcaggtattttggcctccctttcctgcaccagtagtagggaggatttcat |
123 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
28908664 |
gaggaagaggaggagcaacagcagcacgtgcagccacctcccatactggtgcaggtattttggcctccctttcctgcaccagtaatagggagcatttcat |
28908565 |
T |
|
| Q |
124 |
tgattcctatttgtcatcagacacacttccatcatcagaaaaatcatcaaatgttctcatatcaagctggtaacgcagcatcccacctatcccaccaaag |
223 |
Q |
| |
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||||||||||||||| ||||||||| ||||||||||||||| || ||||||||| ||||||||||||||||||||| ||||||||||||||||| || |
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| T |
28908564 |
tgattcctatttgtcgtcagacacatctccatcatcagaaaactcgtcaaatgttttcatatcaagctggtaacgcaagatcccacctatcccacccaaa |
28908465 |
T |
|
| Q |
224 |
cctttgcaaaattgtgaaccttcttgcgatttgttggtgacaatctcaagagtgcaaccaaactgtttgtattcatttgcaaaccactcaaccagagaca |
323 |
Q |
| |
|
||||||||||| ||||||||||||| |||| | ||| |||||| | ||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
28908464 |
cctttgcaaaacagtgaaccttcttgtgattcatcggtaacaatcacgagagtgcaaccaaactgtttgtattcatttgcaaaccactccaacagagact |
28908365 |
T |
|
| Q |
324 |
gcatttcctgaacctcataatcagaagagttttcaggatctctaaagttactttggttggcttcctgttccttgttgaagtgtttaatgacaatttcccc |
423 |
Q |
| |
|
|| ||||||||||||||||||||| | | |||||||||||||||| || || | ||||||||||| |||||||||||||| |||||||||| ||| || |
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| T |
28908364 |
gcttttcctgaacctcataatcagccgcgctttcaggatctctaaaattgctctcattggcttcctgctccttgttgaagtgcttaatgacaacttcacc |
28908265 |
T |
|
| Q |
424 |
ggtagtactattttttaaaacatacctagtcatatccagattttcccagacaataagtgtctcaacagctcctgcatccagagcttgt |
511 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||| ||||| |
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| T |
28908264 |
agtagtactattttttagaacatacctagtcatatccagattttcccatacaataagtgtctcaacagctccagcatcaagatcttgt |
28908177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 24 - 510
Target Start/End: Complemental strand, 28921833 - 28921347
Alignment:
| Q |
24 |
gaggaagaggaggagcagcagcagcacgtgcagccacctcccacaccggtgcaggtattttggcctccctttcctgcaccagtagtagggaggatttcat |
123 |
Q |
| |
|
||||| |||||| |||||||||||||| ||| || || |||| || ||||||||| ||||||||||||||||||||||||| ||||| || ||||||| |
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| T |
28921833 |
gaggaggaggagcagcagcagcagcacatgctaccgccccccatactagtgcaggtactttggcctccctttcctgcaccagtggtaggcagcatttcat |
28921734 |
T |
|
| Q |
124 |
tgattcctatttgtcatcagacacacttccatcatcagaaaaatcatcaaatgttctcatatcaagctggtaacgcagcatcccacctatcccaccaaag |
223 |
Q |
| |
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||||| ||||| ||| ||| |||| | ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
28921733 |
tgattgctattcgtcttcatacacgcctccatcatcagaaaaatcatcaaatgttctcatatcaagctggtagcgcaagatcccacctatcccaccaaaa |
28921634 |
T |
|
| Q |
224 |
cctttgcaaaattgtgaaccttcttgcgatttgttggtgacaatctcaagagtgcaaccaaactgtttgtattcatttgcaaaccactcaaccagagaca |
323 |
Q |
| |
|
|| ||||||| ||||| |||||||| ||||| |||||||||| ||| || |||||||||||| || ||||||||||||||||||| || | ||||||| |
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| T |
28921633 |
cccctgcaaaactgtgagccttcttgtgatttattggtgacaaactcgagcgtgcaaccaaaccgtctgtattcatttgcaaaccagtccaacagagacg |
28921534 |
T |
|
| Q |
324 |
gcatttcctgaacctcataatcagaagagttttcaggatctctaaagttactttggttggcttcctgttccttgttgaagtgtttaatgacaatttcccc |
423 |
Q |
| |
|
| ||||||||||||||||||||| || |||||||||||||||| || || || ||||||||||| |||||||||||||| |||||||||| ||| || |
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|
| T |
28921533 |
tcttttcctgaacctcataatcagcagcagtttcaggatctctaaaattgctctgcttggcttcctgctccttgttgaagtgcttaatgacaacttcacc |
28921434 |
T |
|
| Q |
424 |
ggtagtactattttttaaaacatacctagtcatatccagattttcccagacaataagtgtctcaacagctcctgcatccagagcttg |
510 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
28921433 |
agtagtactattttttaaaacatacctattcatatccagattttcccagacaattagtgtctcaacagctccagcatccagagcttg |
28921347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 153 - 314
Target Start/End: Original strand, 32763362 - 32763523
Alignment:
| Q |
153 |
catcatcagaaaaatcatcaaatgttctcatatcaagctggtaacgcagcatcccacctatcccaccaaagcctttgcaaaattgtgaaccttcttgcga |
252 |
Q |
| |
|
|||||||||| || |||||||||| ||| |||||||||||||| || ||||| || || || |||||||| ||| ||||||| ||||| |||||||| || |
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|
| T |
32763362 |
catcatcagataactcatcaaatgatctgatatcaagctggtagcgaagcatacctccaataccaccaaaccctctgcaaaactgtgacccttcttgaga |
32763461 |
T |
|
| Q |
253 |
tttgttggtgacaatctcaagagtgcaaccaaactgtttgtattcatttgcaaaccactcaa |
314 |
Q |
| |
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||||||||| || | || || | ||| ||||| |||||| ||||| ||||||||||||| |
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|
| T |
32763462 |
tttgttggtcacgaattccagcgagcatccaaatcttttgtactcattcgcaaaccactcaa |
32763523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 153 - 187
Target Start/End: Original strand, 44877907 - 44877941
Alignment:
| Q |
153 |
catcatcagaaaaatcatcaaatgttctcatatca |
187 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |
|
|
| T |
44877907 |
catcatcagaaaaatcatcaaatgttctcacatca |
44877941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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