View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16853_low_41 (Length: 227)
Name: NF16853_low_41
Description: NF16853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16853_low_41 |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 33360164 - 33360343
Alignment:
| Q |
1 |
tttgtgcgtaacaccccgcgcaaaaccttcactcactctttcgctcaaaaggttttgatagtttttgcttcttcatggatcctgacgttgttgaaattcc |
100 |
Q |
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| T |
33360164 |
tttgtgcgtaacaccccgcgcaaaaccttcactcactctttcgctcaaaaggttttgatagtttttgcttcttcatggatcctgacgttgttgaaattcc |
33360263 |
T |
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| Q |
101 |
tcctccaattcaccaagacacaccctcattcaaaaggaagaagaaacgggtagttcttatctattctcctattcaatcaa |
180 |
Q |
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| T |
33360264 |
tcctccaattcaccaagacacacccccattcaaaaggaagaagaaacgggtagttcttatctattctcctattcaatcaa |
33360343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 33367783 - 33367839
Alignment:
| Q |
60 |
agtttttgcttcttcatggatcctgacgttgttgaaattcctcctccaattcaccaa |
116 |
Q |
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|||||||||||| ||||||| | ||| |||||||||||||||||||||||||||||| |
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| T |
33367783 |
agtttttgcttcatcatggaccttgatgttgttgaaattcctcctccaattcaccaa |
33367839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 63 - 116
Target Start/End: Complemental strand, 7765162 - 7765109
Alignment:
| Q |
63 |
ttttgcttcttcatggatcctgacgttgttgaaattcctcctccaattcaccaa |
116 |
Q |
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||||||||||||||||| ||||| ||||||||||||||||||||| |||||||| |
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| T |
7765162 |
ttttgcttcttcatggaccctgatgttgttgaaattcctcctccatttcaccaa |
7765109 |
T |
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