View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16853_low_42 (Length: 220)

Name: NF16853_low_42
Description: NF16853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16853_low_42
NF16853_low_42
[»] chr1 (3 HSPs)
chr1 (16-107)||(14425208-14425298)
chr1 (110-200)||(14425954-14426046)
chr1 (145-200)||(14412609-14412663)


Alignment Details
Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 107
Target Start/End: Original strand, 14425208 - 14425298
Alignment:
Q  16 agagagggaaaatttgaaagtgaagaagataactcaaatggacaagagaatgacaacaaagacctataagatatggagtcctatagtctgga 107  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  14425208 agagagggaaaatttgaaagtgaagaagatagctcaaatggacaagag-atgacaacaaagacctataagatatggagtcctatagtctgga 14425298  T

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Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 110 - 200
Target Start/End: Original strand, 14425954 - 14426046
Alignment:
Q  110 ggcttgtcagacccttggagcatatcccatacaata--caagcttataaactaggacatataaaaaattacaaagcaaaaccatattcctaag 200  Q
    ||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14425954 ggcttgtcagacccttggagcatatcccatacaatatacaagctgataaactaggacatataaaaaattacaaagcaaaaccatattcctaag 14426046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 200
Target Start/End: Original strand, 14412609 - 14412663
Alignment:
Q  145 acaagcttataaactaggacatataaaaaattacaaagcaaaaccatattcctaag 200  Q
    |||||||||||||| | |||||| ||||||||||||||| ||||||||||||||||    
T  14412609 acaagcttataaaccaagacataaaaaaaattacaaagc-aaaccatattcctaag 14412663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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