View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16853_low_6 (Length: 449)
Name: NF16853_low_6
Description: NF16853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16853_low_6 |
 | |
|
| [»] chr5 (3 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 397; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 18 - 449
Target Start/End: Complemental strand, 14773298 - 14772864
Alignment:
| Q |
18 |
ttcaggtaccctgtcttatagttgtagctaaagatgatcaagattcatttacaatggctatccaagaggcaactatggtatttttcattattttatctat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14773298 |
ttcaggtaccctgtcttatagttgtagctaaagatgatcaagattcatttacaatggctatccaagaggcaactatggtatttttcattattttatctat |
14773199 |
T |
|
| Q |
118 |
ctgcattgtcatatacgtaattgtacatgcatattgatgtacttcattgtttgatgggttagataaatagatattttatgtggtatgatagaacctataa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14773198 |
ctgcattgtcatatacgtaattgtacatgcatattgatgtacttcattgtttgatgggttagataaatagatattttatgtggtatgatagaacctataa |
14773099 |
T |
|
| Q |
218 |
aataaagacaagaaacggtatattatttgatgaaaagtgatgagctcaagcgctctctacaatggtgtaaactttgattgctg---taagctttatatat |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
14773098 |
aataaagacaagaaacggtatattatttgacgaaaagtgatgagctcaagcgctctctacaatggtgtcaactttgattgctgttataagctttatatat |
14772999 |
T |
|
| Q |
315 |
tagacaaatttcacacttattacaacacgttcaccttcatgcgcattttaatataggttcgtgttttgtcttatatatgttcaattgatacgttagttgc |
414 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
14772998 |
tagacaactttcacacttattacaacacgttcaccttcatgcgcattttaatataggttcgtgttctgtcttatatatgttcaattgatacgtcagttgc |
14772899 |
T |
|
| Q |
415 |
agattgtagcgagaaactttatattgatgtagttc |
449 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |
|
|
| T |
14772898 |
agattgtagcgagaaactttatatcgatgtagttc |
14772864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 18 - 193
Target Start/End: Complemental strand, 15014702 - 15014527
Alignment:
| Q |
18 |
ttcaggtaccctgtcttatagttgtagctaaagatgatcaagattcatttacaatggctatccaagaggcaactatggtatttttcattattttatctat |
117 |
Q |
| |
|
||||||| |||||||||| ||||| || ||| |||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||| || |
|
|
| T |
15014702 |
ttcaggtgccctgtcttacagttgcagttaatgatgatcaggattcatttacaatggctatacaagagacaactatggtatttttcattattttattcat |
15014603 |
T |
|
| Q |
118 |
ctgcattgtcatatacgtaattgtacatgcatattgatgtacttcattgtttgatgggttagataaatagatattt |
193 |
Q |
| |
|
|| || |||||||| |||||| |||||||||||| ||||| | | || | |||||||||||||||||||||||| |
|
|
| T |
15014602 |
ttgaatgatcatatacataattgaacatgcatattgctgtacataactgctggatgggttagataaatagatattt |
15014527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 15047463 - 15047280
Alignment:
| Q |
18 |
ttcaggtaccctgtcttatagttgtagctaaagatgatcaagattcatttacaatggctatccaagaggcaactatggtatttttcattattttatctat |
117 |
Q |
| |
|
||||||| || |||||||| || | ||||||||||||| |||||||||||||||||| ||| |||| | ||||| |||||||||||| |||| | |
|
|
| T |
15047463 |
ttcaggtgccttgtcttatggtagcagctaaagatgataaagattcatttacaatggttatagaagaagaaactacagtatttttcattcacttattcct |
15047364 |
T |
|
| Q |
118 |
ctgcattgtcatatacgtaattgtacatgcatattgatgtacttcattgtttgatgggttagataaatagatattttatgtggt |
201 |
Q |
| |
|
||||| |||||| | ||||| ||||||||||||||| || | |||||| ||||| |||||||||||||||| | ||||||| |
|
|
| T |
15047363 |
ttgcatgttcatattcataattctacatgcatattgatataaataattgttggatggattagataaatagatatctaatgtggt |
15047280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 21 - 141
Target Start/End: Original strand, 36877273 - 36877393
Alignment:
| Q |
21 |
aggtaccctgtcttatagttgtagctaaagatgatcaagattcatttacaatggctatccaagaggcaactatggtatttttcattattttatctatctg |
120 |
Q |
| |
|
|||| |||||||||||||||| |||||| ||||||| ||| ||||| || ||||||| |||||| |||||| |||||||||| ||| |||| || || |
|
|
| T |
36877273 |
aggtgccctgtcttatagttgcagctaaggatgatctggatccatttgcattggctatacaagagtcaactagggtatttttcgttaacttattaatttg |
36877372 |
T |
|
| Q |
121 |
cattgtcatatacgtaattgt |
141 |
Q |
| |
|
||| |||||||| ||||||| |
|
|
| T |
36877373 |
catgatcatatacataattgt |
36877393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 53868997 - 53869070
Alignment:
| Q |
32 |
cttatagttgtagctaaagatgatcaagattcatttacaatggctatccaagaggcaactatggtatttttcat |
105 |
Q |
| |
|
|||||||||| |||||||||||| || ||||||||| ||||||||| |||||| ||||| |||||||||||| |
|
|
| T |
53868997 |
cttatagttgcagctaaagatgaacaggattcatttccaatggctacacaagagttaactagggtatttttcat |
53869070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 101
Target Start/End: Complemental strand, 51365560 - 51365480
Alignment:
| Q |
21 |
aggtaccctgtcttatagttgtagctaaagatgatcaagattcatttacaatggctatccaagaggcaactatggtatttt |
101 |
Q |
| |
|
|||| ||||| |||||||||| |||||||||||| || |||||||| |||||||| | |||||| |||||| |||||||| |
|
|
| T |
51365560 |
aggtgccctgccttatagttgcagctaaagatgaccagtattcatttccaatggctgtacaagagtcaactagggtatttt |
51365480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 273
Target Start/End: Original strand, 30782364 - 30782423
Alignment:
| Q |
215 |
taaaataaagacaa-gaaacggtatattatttgatgaaaagtgatgagctcaagcgctct |
273 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||| ||||| ||| |||||||| ||||| |
|
|
| T |
30782364 |
taaaataaaggcaaagaaacggtatattatttgataaaaagagataagctcaagagctct |
30782423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University