View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16854_low_2 (Length: 498)
Name: NF16854_low_2
Description: NF16854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16854_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 6 - 491
Target Start/End: Original strand, 23134642 - 23135127
Alignment:
| Q |
6 |
gatggacatcatccttatgatagctagtttcaccaatttggtcttttgtggggtggttagcttcttggtcatttggaatgggggtggcgagcatgaaact |
105 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23134642 |
gatgaacatcatccttatgatagctagtttcaccaatttggtcttttgtggggtggttagcttcttggtcatttggaatgggggtggcgagcatgaaact |
23134741 |
T |
|
| Q |
106 |
tgaattagggtcgggttcaggtgttggattattgactaaggtgggatcattttcttgaacttcatttgtggtagtttgtttagttggtaactgttgggtt |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23134742 |
tgaattagggtcgggttcaggtgttggattattgactaaggtgggatcattttcttgaacttcatttgtggtagtttgtttagttggtaactgttgggtt |
23134841 |
T |
|
| Q |
206 |
gtttttggcacgtgcggttcaggtgtggtcttgtggctgtgtgggggcgacaacactaaagggttgacttgggagaagtcaaagactggttcatcagtgg |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23134842 |
gtttttggcacgtgcggttcaggtgtggtcttgtggctgtgtgggggcgacaacactaaagggttgacttgggagaagtcaaagactggttcatcagtgg |
23134941 |
T |
|
| Q |
306 |
ccatggtgtcatgtctgcgacgtttcgtgtctttgggcacttgaaggatgcatctttggacagtaatggggcatgactggttatttggaaggggtaggcc |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
23134942 |
ccatggtgtcatgtctgcgacgtttcgtgtctttgggcacttgaaggatgcatcttcggacagtaatggggcgtgactggttatttggaaggggtaggcc |
23135041 |
T |
|
| Q |
406 |
agttttgtttctagttgttagatgattaagggcattgaacctgttattttttgttgtaacggttttttggggatttatgatgatgt |
491 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23135042 |
agttttgtttctagttgttagatgattaagggcattgaacctgttattttttgttgtaacggttttttggggatttatgatgatgt |
23135127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 6 - 491
Target Start/End: Complemental strand, 11895238 - 11894753
Alignment:
| Q |
6 |
gatggacatcatccttatgatagctagtttcaccaatttggtcttttgtggggtggttagcttcttggtcatttggaatgggggtggcgagcatgaaact |
105 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
11895238 |
gatgaacatcatccttatgatagctagtttcaccaatttggtcttttgtggggtggttagcttcttggtcatttagaatgggggtggcgagcatgaaact |
11895139 |
T |
|
| Q |
106 |
tgaattagggtcgggttcaggtgttggattattgactaaggtgggatcattttcttgaacttcatttgtggtagtttgtttagttggtaactgttgggtt |
205 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11895138 |
tgaattcgggtcgggttcaggtgttggattattgactaaggtgggatcattttcttgaacttcatttgtggtagtttgtttagttggtaactgttgggtt |
11895039 |
T |
|
| Q |
206 |
gtttttggcacgtgcggttcaggtgtggtcttgtggctgtgtgggggcgacaacactaaagggttgacttgggagaagtcaaagactggttcatcagtgg |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11895038 |
gtttttggcacgtgcggttcaggtgtggtcttgtggctgtgtgggggcgacaacactaaagggttgacttgggagaagtcaaagactggttcatcagtgg |
11894939 |
T |
|
| Q |
306 |
ccatggtgtcatgtctgcgacgtttcgtgtctttgggcacttgaaggatgcatctttggacagtaatggggcatgactggttatttggaaggggtaggcc |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
11894938 |
ccatggtgtcatgtctgcgacgtttcgtgtctttgggcacttgaaggatgcatcttcggacagtaatggggcgtgactggttatttggaaggggtaggcc |
11894839 |
T |
|
| Q |
406 |
agttttgtttctagttgttagatgattaagggcattgaacctgttattttttgttgtaacggttttttggggatttatgatgatgt |
491 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11894838 |
agttttgtttctagttgttagatgattaagggcattgaacctgttattttttgttgtaacggttttttggggatttatgatgatgt |
11894753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 6 - 491
Target Start/End: Complemental strand, 20282939 - 20282454
Alignment:
| Q |
6 |
gatggacatcatccttatgatagctagtttcaccaatttggtcttttgtggggtggttagcttcttggtcatttggaatgggggtggcgagcatgaaact |
105 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20282939 |
gatgaacatcatccttatgatagctagtttcaccaatttggtcttttgtggggtggttagcttcttggtcatttggaatgggggtggcgagcatgaaact |
20282840 |
T |
|
| Q |
106 |
tgaattagggtcgggttcaggtgttggattattgactaaggtgggatcattttcttgaacttcatttgtggtagtttgtttagttggtaactgttgggtt |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20282839 |
tgaattagggtcgggttcaggtgttggattattgactaaggtgggatcattttcttgaacttcatttgtggtagtttgtttagttggtaactgttgggtt |
20282740 |
T |
|
| Q |
206 |
gtttttggcacgtgcggttcaggtgtggtcttgtggctgtgtgggggcgacaacactaaagggttgacttgggagaagtcaaagactggttcatcagtgg |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20282739 |
gtttttggcacgtgcggttcaggtgtggtcttgtggctgtgtgggggcgacaacactaaagggttgacttgggagaagtcaaagactggttcatcagtgg |
20282640 |
T |
|
| Q |
306 |
ccatggtgtcatgtctgcgacgtttcgtgtctttgggcacttgaaggatgcatctttggacagtaatggggcatgactggttatttggaaggggtaggcc |
405 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||| |
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|
| T |
20282639 |
ccatggtgtcatgtctacgatgtttcgtgtctttgggcacttgaaggatgcatctctggacaataatggggcgtgactggttatttggaaggggtaggcc |
20282540 |
T |
|
| Q |
406 |
agttttgtttctagttgttagatgattaagggcattgaacctgttattttttgttgtaacggttttttggggatttatgatgatgt |
491 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20282539 |
agttttgtttctagttgttagatgattaagggcattgaacctgttattttttgttgtaacggttttttggggatttatgatgatgt |
20282454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 113; Significance: 5e-57; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 122 - 487
Target Start/End: Original strand, 14655859 - 14656230
Alignment:
| Q |
122 |
tcaggtgttggattattgactaaggtgggatcattttcttgaacttcatttgtggtagtttgtttagttggtaactgttgggttgtttttggcacgtgcg |
221 |
Q |
| |
|
||||||||| ||||||||| | ||||| |||||| |||| ||||||| ||||||||||||||| ||||||| ||||| |||||||| |||||||||| |
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|
| T |
14655859 |
tcaggtgtttgattattgataacaatgggaacatttttttgagcttcattagtggtagtttgtttatttggtaattgttgagttgttttaggcacgtgcg |
14655958 |
T |
|
| Q |
222 |
gttcaggtgtggtcttgtggctgtgtgggggcgacaacactaaagggttgacttgggagaagtcaaagactggttcatcagtggccatggtgtcatgtct |
321 |
Q |
| |
|
||||||| |||| |||| || || ||||||||||||||| |||||||||||| |||||||||||||| | || |||||||||| ||| |||||| || |
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|
| T |
14655959 |
gttcaggagtggccttgcggttgagtgggggcgacaacattaaagggttgacatgggagaagtcaaaaatcggctcatcagtggtgatgtcgtcatgcct |
14656058 |
T |
|
| Q |
322 |
gcgacgtttcgtgtctttgggcacttgaaggatgcatctttggacagtaatg------gggcatgactggttatttggaaggggtaggccagttttgttt |
415 |
Q |
| |
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||||||||| |||||||| || |||||| || ||| | ||||| ||||| || |||| || |||||| || ||| | || |||||| ||||||| |
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|
| T |
14656059 |
gcgacgttttgtgtctttaggaacttgatgggtgcgtgtttggtcagtagtggggtaagggcgtggctggttgttaggattgagtgggccagctttgttt |
14656158 |
T |
|
| Q |
416 |
ctagttgttagatgattaagggcattgaacctgttattttttgttgtaacggttttttggggatttatgatg |
487 |
Q |
| |
|
||| | |||||| |||||||||||||| ||||| ||||| ||||||||||||||| |||||||||||| |
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|
| T |
14656159 |
ctaatagttagactgttaagggcattgaatttgttaattttttatgtaacggttttttgtggatttatgatg |
14656230 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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