View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16855_low_1 (Length: 758)
Name: NF16855_low_1
Description: NF16855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16855_low_1 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 632; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 632; E-Value: 0
Query Start/End: Original strand, 1 - 652
Target Start/End: Complemental strand, 47419342 - 47418691
Alignment:
| Q |
1 |
tagacaaaaaccaacacaggttcttctggtggacagcagccccctgtaaggatttctactgttacttccagtggaacaaaatttaatgatcccgatgcat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47419342 |
tagacaaaaaccaacacaggttcttctggtggacagcagccccctgtaaggatttctactgttacttccagtggaacaaaatttaatgatcccgatgcat |
47419243 |
T |
|
| Q |
101 |
tagcacaactgcatcagagaagcaggaatgcagctgcagaccattctcataatgcttcttcagctatccaagtaaagagtgagccaacctattcaactat |
200 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47419242 |
tagcacaactgcatcagagaagctggaatgcagctgcagaccattctcataatgcttcttcagctatccaagtaaagagtgagccaacctattcaactat |
47419143 |
T |
|
| Q |
201 |
ggacatcagtgctaaaaaacctcaggaacatgatgttcgagtcgtgcaatcaaatcaattaccaacatccagttctattgctattagtcaagaaactgaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47419142 |
ggacatcagtgctaaaaaacctcaggaacatgatgttcgagtcgtgcaatcaaatcaattaccaacatccagttctattgctattagtcaagaaactgaa |
47419043 |
T |
|
| Q |
301 |
agatccaccgttcacatgcaaggccttaataagcagcaacaacagcatatacatttcccatcgacatatggaagcagtggtggtaactacaaccattttt |
400 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
47419042 |
agatccaccattcacatgcaaggccttaataagcagcaacaacagcatatacatttcccatcgacatatggaagcagtggtggtaactacagccattttt |
47418943 |
T |
|
| Q |
401 |
ccgggacaataactggttcattatcatctctcagaccacaacttcatcatcatgatttacacataaggagaattccagatctgaacattggtctaaatca |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47418942 |
ccgggacaataactggttcattatcatctctcagaccacaacttcatcatcatgatttacacataaggagaattccagatctgaacattggtctaaatca |
47418843 |
T |
|
| Q |
501 |
cttgggtgtagaacggcagagtacattcaacgattctaagtgaatgcgaggttgatctgtgtcaactgaacatttatctaaattgcatgggatgcctatt |
600 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47418842 |
cttgggtgtaatacggcagagtacattcaacgattctaagtgaatgcgaggttgatctgtgtcaactgaacatttatctaaattgcatgggatgcctatt |
47418743 |
T |
|
| Q |
601 |
gttaactctggtgaaattgaacagggtattggtgtcaatcaaggctctgtat |
652 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47418742 |
gttaactctggtgaaattgaacagggtattggtgtcaatcaaggctctgtat |
47418691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 2 - 568
Target Start/End: Complemental strand, 47390978 - 47390415
Alignment:
| Q |
2 |
agacaaaaaccaacacaggttcttctggtggacagcagccccctgtaaggatttctactgttacttccagtggaacaaaatttaatgatcccgatgcatt |
101 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||| ||||||| |
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|
| T |
47390978 |
agacaaaaaccaatacaggttcttctgg---acagcagccccctgtaaggatgccaactgttacttccagtggaacaaaatttaacgatccccatgcatt |
47390882 |
T |
|
| Q |
102 |
agcacaactgcatcagagaagcaggaatgcagctgcagaccattctcataatgcttcttcagctatccaagtaaagagtgagccaacctattcaactatg |
201 |
Q |
| |
|
||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
47390881 |
agcacaactgcatcagagaagtatgaatgctgctgcagaccattctcataatgcttcttcagctatccaagtgaagagtgagccaacctattcaactatg |
47390782 |
T |
|
| Q |
202 |
gacatcagtgctaaaaaacctcaggaacatgatgttcgagtcgtgcaatcaaatcaattaccaacatccagttctattgctattagtcaagaaactgaaa |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
47390781 |
gacatcagtgctaaaaaacctcaggaacatgatgttcgagtagtgcaatcaaatcaattaccaacatccagttctattgctgttagtcaagaaactgaaa |
47390682 |
T |
|
| Q |
302 |
gatccaccgttcacatgcaaggccttaataagcagcaacaacagcatatacatttcccatcgacatatggaagcagtggtggtaactacaaccatttttc |
401 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |
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|
| T |
47390681 |
gatctgccgttcacatgcaaggcctaaataagcagcaacaacagcatatacatttcccatcgacatatggaggcagtggtggtaactacagccatttttc |
47390582 |
T |
|
| Q |
402 |
cgggacaataactggttcattatcatctctcagaccacaacttcatcatcatgatttacacataaggagaattccagatctgaacattggtctaaatcac |
501 |
Q |
| |
|
|||||||| ||| |||||| ||||||| |||||||||||| ||||| |||||||| |||||||||| ||||||| ||| || |||||||||||||||| |
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| T |
47390581 |
cgggacaaccactagttcatcatcatctttcagaccacaacctcatcctcatgattcacacataaggcaaattccacatccgagcattggtctaaatcac |
47390482 |
T |
|
| Q |
502 |
ttgggtgtagaacggcagagtacattcaacgattctaagtgaatgcgaggttgatctgtgtcaactg |
568 |
Q |
| |
|
|| |||| |||||| |||||| | ||||| ||| ||||| |||||| |||| |||||||||| |||| |
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|
| T |
47390481 |
ttaggtgcagaacgtcagagttctttcaatgatcctaagagaatgccaggtggatctgtgtcgactg |
47390415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 4 - 440
Target Start/End: Complemental strand, 47421795 - 47421362
Alignment:
| Q |
4 |
acaaaaaccaacacaggttcttctggtggacagcagccccctgtaaggatttctactgttacttccagtggaacaaaatttaatgatcccgatgcattag |
103 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||| |||||||||| |
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|
| T |
47421795 |
acaaaaaccaatacaggttcttctgg---acagcagccccctgtaaggatgccaactgttacttccagtggaacaaaatttaatggtcctgatgcattag |
47421699 |
T |
|
| Q |
104 |
cacaactgcatcagagaagcaggaatgcagctgcagaccattctcataatgcttcttcagctatccaagtaaagagtgagccaacctattcaactatgga |
203 |
Q |
| |
|
||||||| ||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
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|
| T |
47421698 |
cacaactacatcagagaagtacgaatgctgctgcagaccattctcataatgcttcttcagctatccaagtgaagagtgagccaagctattcaactatgga |
47421599 |
T |
|
| Q |
204 |
catcagtgctaaaaaacctcaggaacatgatgttcgagtcgtgcaatcaaatcaattaccaacatccagttctattgctattagtcaagaaactgaaaga |
303 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| ||| || ||| |||||||| | |||||||||||| | ||||||||||||||||||| |
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|
| T |
47421598 |
catcagtgctaaaaaatctcaggaacatgatgttcgagtagtggaaccaactcaattactaccatccagttctaacaccattagtcaagaaactgaaaac |
47421499 |
T |
|
| Q |
304 |
tccaccgttcacatgcaaggccttaataagcagcaacaacagcatatacatttcccatcgacatatggaagcagtggtggtaactacaaccatttttccg |
403 |
Q |
| |
|
|| | ||| || |||||| || |||| ||||||||||| ||||| |||||||||| | |||||| || ||||||| | |||| |||| ||||| | |
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|
| T |
47421498 |
accccagtttgcacacaaggcttttataatcagcaacaacaacatattcatttcccattgccatatgaaatcagtggttgcaactttaacccttttttgg |
47421399 |
T |
|
| Q |
404 |
ggacaataactggttcattatcatctctcagaccaca |
440 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
47421398 |
ggacaatcactggttcattatcatctctcagaccaca |
47421362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 80 - 557
Target Start/End: Complemental strand, 47408017 - 47407540
Alignment:
| Q |
80 |
aatttaatgatcccgatgcattagcacaactgcatcagagaagcaggaatgcagctgcagaccattctcataatgcttcttcagctatccaagtaaagag |
179 |
Q |
| |
|
|||||||||||||| ||||| ||| | ||||||||| |||||| | |||||| ||||| ||||||||||||||| |||||||| |||||||| |||| |
|
|
| T |
47408017 |
aatttaatgatccccatgcaatagtaaaactgcatccgagaagtatgaatgctgctgcggaccattctcataataattcttcagtaatccaagtgaagac |
47407918 |
T |
|
| Q |
180 |
tgagccaacctattcaactatggacatcagtgctaaaaaacctcaggaacatgatgttcgagtcgtgcaatcaaatcaattaccaacatccagttctatt |
279 |
Q |
| |
|
|| ||| || ||||||||||||||||| ||| |||||||| |||||||||||||||||| || ||| || ||| |||||||| |||| ||||||| |
|
|
| T |
47407917 |
tgggccgacttattcaactatggacattagtactaaaaaatctcaggaacatgatgttcaagcagtggaaccaactcaattactgccatctagttctaac |
47407818 |
T |
|
| Q |
280 |
gctattagtcaagaaactgaaagatccaccgttcacatgcaaggccttaataagcagcaacaacagcatatacatttcccatcgacatatggaagcagtg |
379 |
Q |
| |
|
| ||| ||||||||||||||| || | ||||||| |||||| || |||| ||||||||||| ||||||||||| |||||| |||||| || ||||| |
|
|
| T |
47407817 |
accatttgtcaagaaactgaaaacaccccagttcacacacaaggcttttataatcagcaacaacaacatatacattttccatcgccatatgaaatcagtg |
47407718 |
T |
|
| Q |
380 |
gtggtaactacaaccatttttccgggacaataactggttcattatcatctctcagaccacaacttcatcatcatgatttacacataaggagaattccaga |
479 |
Q |
| |
|
|||| |||| || | ||||| |||| ||| |||||||||||||||||||| |||||||||| ||| | || ||| ||||| ||||||||||||| | |
|
|
| T |
47407717 |
gtggcaactttaatccttttttggggaaaatcactggttcattatcatctctaagaccacaacctcaacctctcaattcacacaaaaggagaattccaca |
47407618 |
T |
|
| Q |
480 |
tctgaacattggtctaaatcacttgggtgtagaacggcagagtacattcaacgattctaagtgaatgcgaggttgatc |
557 |
Q |
| |
|
|| || ||||||||| ||||||||||||||||||| ||||||| |||||| ||| ||||| ||||||||||| |||| |
|
|
| T |
47407617 |
tcagagcattggtctcaatcacttgggtgtagaacagcagagtttattcaatgatcctaagagaatgcgaggtggatc |
47407540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 652 - 758
Target Start/End: Complemental strand, 47417904 - 47417798
Alignment:
| Q |
652 |
tagaatcaggttccaccacacgagcaacaagctaagcagcaacagcaagaagcaccagggaccatgggacaggacgtactgccccacagatattggttat |
751 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| | |
|
|
| T |
47417904 |
tagaatcaggttccaccacacgagcaacaagctaagcagcaacagcaagaagcaccggggaccatgggacaggacgtactgcaccacagatattggttgt |
47417805 |
T |
|
| Q |
752 |
gagtcca |
758 |
Q |
| |
|
||||||| |
|
|
| T |
47417804 |
gagtcca |
47417798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 571 - 651
Target Start/End: Complemental strand, 47390277 - 47390197
Alignment:
| Q |
571 |
catttatctaaattgcatgggatgcctattgttaactctggtgaaattgaacagggtattggtgtcaatcaaggctctgta |
651 |
Q |
| |
|
||||||||||| ||||||||| ||||| |||||| |||||| ||| ||||||||||| |||| ||||||||||| ||||| |
|
|
| T |
47390277 |
catttatctaagttgcatgggttgccttctgttaattctggtcaaaatgaacagggtagtggtatcaatcaaggcactgta |
47390197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 571 - 645
Target Start/End: Complemental strand, 47407436 - 47407362
Alignment:
| Q |
571 |
catttatctaaattgcatgggatgcctattgttaactctggtgaaattgaacagggtattggtgtcaatcaaggc |
645 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||| |||||| ||| |||||||||| || ||||||||||||| |
|
|
| T |
47407436 |
catttatctaaattgcatgggttgccttctgttaattctggtcaaaatgaacagggtggtgatgtcaatcaaggc |
47407362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 139 - 206
Target Start/End: Original strand, 46796313 - 46796380
Alignment:
| Q |
139 |
gaccattctcataatgcttcttcagctatccaagtaaagagtgagccaacctattcaactatggacat |
206 |
Q |
| |
|
||||||||||||| | ||||||||||| | ||||| ||||||||||| |||||||||| ||||||||| |
|
|
| T |
46796313 |
gaccattctcatattacttcttcagctcttcaagtgaagagtgagccgacctattcaattatggacat |
46796380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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