View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16855_low_10 (Length: 209)
Name: NF16855_low_10
Description: NF16855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16855_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 5e-92; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 12 - 194
Target Start/End: Complemental strand, 37348131 - 37347949
Alignment:
| Q |
12 |
aggagcagagaagggaatttgtttaacttggaaggatttatgggtgactgtttctgcttcaacaggaaaaaccaatgaaagcaaatcaattcttcagggt |
111 |
Q |
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| T |
37348131 |
aggagaagagaagggagtttgtttaacttggaaggatttatgggtgactgtttctgcttcaacaggaaaaaccaatgaaagcaaatcaattcttcagggt |
37348032 |
T |
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| Q |
112 |
ctgactggttatgcaaaaccagctcagcttttggctattatgggtccttctggttgtggaaaatctacacttcttgatgcttt |
194 |
Q |
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| T |
37348031 |
ctaactggttatgcaaaaccagctcagcttttggctattatgggtccttctggttgtggaaaatctacacttcttgatgcttt |
37347949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 194
Target Start/End: Original strand, 37290232 - 37290288
Alignment:
| Q |
138 |
gcttttggctattatgggtccttctggttgtggaaaatctacacttcttgatgcttt |
194 |
Q |
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| T |
37290232 |
gcttttggctattatgggtccatctggctctggaaaatccacacttcttgatgcttt |
37290288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 189
Target Start/End: Original strand, 37315410 - 37315514
Alignment:
| Q |
85 |
aatgaaagcaaatcaattcttcagggtctgactggttatgcaaaaccagctcagcttttggctattatgggtccttctggttgtggaaaatctacacttc |
184 |
Q |
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| T |
37315410 |
aatggaagcaaatcaattcttcaaggattaactggttatgctaaacctggtcaactcttggccataatgggtccttctggctgtggcaagtctacactac |
37315509 |
T |
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| Q |
185 |
ttgat |
189 |
Q |
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| T |
37315510 |
ttgat |
37315514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 189
Target Start/End: Original strand, 37326963 - 37327067
Alignment:
| Q |
85 |
aatgaaagcaaatcaattcttcagggtctgactggttatgcaaaaccagctcagcttttggctattatgggtccttctggttgtggaaaatctacacttc |
184 |
Q |
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| T |
37326963 |
aatggaagcaaatcaattcttcaaggattaactggttatgctaaacctggtcaactcttggccataatgggtccttctggctgtggcaagtctacactac |
37327062 |
T |
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| Q |
185 |
ttgat |
189 |
Q |
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||||| |
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| T |
37327063 |
ttgat |
37327067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 143 - 194
Target Start/End: Original strand, 29476610 - 29476661
Alignment:
| Q |
143 |
tggctattatgggtccttctggttgtggaaaatctacacttcttgatgcttt |
194 |
Q |
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| T |
29476610 |
tggctattatgggtccatctggttctggaaaatctactcttcttgatgcttt |
29476661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 194
Target Start/End: Complemental strand, 19554367 - 19554258
Alignment:
| Q |
85 |
aatgaaagcaaatcaattcttcagggtctgactggttatgcaaaaccagctcagcttttggctattatgggtccttctggttgtggaaaatctacacttc |
184 |
Q |
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|||| ||||| |||||||||||| || || || ||||||| || |||| ||| |||||||| || ||||| |||||||| ||||| || |||||||| | |
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| T |
19554367 |
aatggaagcagatcaattcttcacggactaacaggttatgttaagccaggtcaacttttggccataatgggcccttctggctgtggcaagtctacactac |
19554268 |
T |
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| Q |
185 |
ttgatgcttt |
194 |
Q |
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||||| |||| |
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| T |
19554267 |
ttgatacttt |
19554258 |
T |
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